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http://bioinformatics.fh-hagenberg.at/site/index.php?id=17
Software scoring system to identify peptides out of tandem mass spectrometry data using database of known proteins. Universal identification algorithm optimized for high resolution and high accuracy tandem mass spectra. Software tool as peptide and protein identification algorithm developed by Bioinformatics Research Group University of Applied Sciences Upper Austria in close cooperation with group of Karl Mechtler at IMP Vienna, Austria.
Proper citation: MS Amanda (RRID:SCR_018396) Copy
https://atcormedical.com/technology/sphygmocor-xcel/
System for measuring pulse wave velocity, pulse wave analysis by ATCOR. System for noninvasive central blood pressure waveform assessment. Provides measures of central arterial pressure waveform and pulse wave velocity as well as assessment of arterial stiffness via waveform analysis e.g. augmentation index, augmented pressure, and reflected wave magnitude.
Proper citation: ATCOR: SphygmoCor (RRID:SCR_018323) Copy
https://www.itamar-medical.com/professionals/watchpat-300-copy/
System for non-invasive vascular function assessment by Itamar Medical Ltd.
Proper citation: Itamar: EndoPat (RRID:SCR_018322) Copy
http://statistika.mfub.bg.ac.rs/interactive-dotplot/
Web-based tool to create customized interactive graphics, including univariate scatterplots, box plots, and violin plots, for comparing values of continuous variable across different study groups, visualization of subgroups or clusters of non-independent data. Web visualization tool for creating dot plots, box plots and violin plots for small sample size data sets.
Proper citation: Interactive Dotplot (RRID:SCR_018329) Copy
https://lancs.shinyapps.io/ToxBox/
Web tool for creating box plots with dot plots. Boxplot for grouped and clustered data in toxicology. Jittered boxplots for visualizing grouped and clustered data from toxicological studies together with individual raw values and indications of statistical significance.
Proper citation: Jittered Boxplots for Toxicological Data (RRID:SCR_018326) Copy
Resource to aggregate all outbreak information into single location during outbreaks of emerging diseases, such as COVID-19.
Proper citation: outbreak.info (RRID:SCR_018282) Copy
https://discourse.data-against-covid.org/t/list-of-pis-supporting-this-endeavour/124
Group of volunteer data scientists, machines learning experts, bioinformaticians and professional software developers who have joined together to offer their expertise for any data analysis problems that arise in context of ongoing coronavirus pandemic.
Proper citation: Data-Against-COVID Team (RRID:SCR_018288) Copy
Cloud resources for COVID-19 research provided by Rescale, Google Cloud, and Microsoft Azure. High performance computing resources immediately available for COVID-19 research.
Proper citation: Cloud resources for COVID-19 research (RRID:SCR_018286) Copy
https://precisionary.com/wp-content/uploads/2018/06/Compresstome-VF-700-0Z-User-Manual_FINAL.pdf
Vibrotome by Precisionary Instruments designed for cutting fixed tissue slices for histology studies. Offers two point stabilization of blade holder to eliminate unwanted chatter marks on surfaces of tissue slice. Fully automated to section fixed tissues with thickness range of 4 um to 2000 um with adjustable precision of 1 um.
Proper citation: Precisionary: Compresstome VF-700 (RRID:SCR_018409) Copy
Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics. Collection of identified cis-eQTLs for 12,254 unique genes, which represent 61% of all protein-coding genes expressed in human cell types. Datasets to help reveal effects of disease risk associated genetic polymorphisms on specific immune cell types, providing mechanistic insights into how they might influence pathogenesis.
Proper citation: Database of Immune Cell Epigenomes (RRID:SCR_018259) Copy
https://www.olympus-lifescience.com/en/microscopes/virtual/vs120/
VS120 Virtual Slide Microscope. Part of slide loader system for manually loading standard slides by Olympus.
Proper citation: Olympus: VS120 microscope (RRID:SCR_018411) Copy
https://www.mbfbioscience.com/biolucida
Enables visualization, storage and sharing of large image data. Cloud based system by MBF Bioscience to help with data from 2D and 3D slide scanners, confocal Z-stacks, lightsheet whole brain images. System for data storage and management, data analysis and visualization. Data is stored in secure and permanent way. Available also is free application named Biolucida Viewer, for viewing public images or images shared by collaborators owning Biolucida.
Proper citation: Biolucida (RRID:SCR_018256) Copy
https://www.thermofisher.com/order/catalog/product/4366073#/4366073
Mastermix reagent
Proper citation: https://www.thermofisher.com/order/catalog/product/4366073#/4366073 (RRID:SCR_018377) Copy
https://www.sympy.org/en/index.html
Software Python library for symbolic mathematics. It aims to become full featured computer algebra system (CAS) while keeping code as simple as possible in order to be comprehensible and easily extensible.
Proper citation: SymPy (RRID:SCR_018417) Copy
https://CRAN.R-project.org/package=multcomp
Software R package for simultaneous inference in general parametric models. Offers interface to perform multiple comparisons in general context. Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models.
Proper citation: multcomp (RRID:SCR_018255) Copy
https://glycocheck.com/health-score-technology/
Microvascular health measurement system that measures endothelial glycocalyx layer of vessels by MicroVascular Health Solutions. Software automatically identifies measurable micro vessels, below 30 µm thickness, during acquisition by contrast between RBC and background. After acquisition, software undergoes series of quality checks to measure vascular segments that are of good quality. Video microscope is placed under tongue, showing live movement of red blood cells as they travel through micro vessels.
Proper citation: GlycoCalyx: GlycoCheck (RRID:SCR_018254) Copy
https://github.com/smortezah/smashpp
Software tool to find and visualize rearrangements in DNA sequences.
Proper citation: smashpp (RRID:SCR_018307) Copy
Web service for prediction of SUMOylation sites and SUMO-interaction motifs in proteins by CUCKOO Workgroup.
Proper citation: GPS-SUMO (RRID:SCR_018261) Copy
https://www.flidea.tech/flic-support
R Code used to analyze FLIC data. Functions are provided to examine interactions with food for single well and food choice experiments when fly makes physical contact with liquid food.
Proper citation: R scripts for FLIC data analysis (RRID:SCR_018386) Copy
Portal for information about moderation of social science papers. Home for SocArXiv. Blog and information center. Site hosts announcements of news and developments related to archive, as well as essays that reflect views of listed authors.
Proper citation: SocOpen (RRID:SCR_018384) Copy
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