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https://www.universite-lyon.fr/

University of Lyon, located in Lyon and Saint-Étienne, France, is a center for higher education and research comprising 11 members and 24 associated institutions.

Proper citation: University of Lyon; France (RRID:SCR_010178) Copy   

•   Source: SciCrunch Registry

http://www.sdsu.edu/

Public research university in San Diego, California. Founded in 1897 as San Diego Normal School, it is the third-oldest university in the 23-member California State University system.

Proper citation: San Diego State University; California; USA (RRID:SCR_009874) Copy   

•   Source: SciCrunch Registry

http://dna.engr.uconn.edu/?page_id=105

Software package that can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing (RNA-Seq) data.

Proper citation: IsoEM (RRID:SCR_009993) Copy   

•   Source: SciCrunch Registry

http://www.york.ac.uk/crd/

A research department of the University of York provides research-based information about the effects of health and social care interventions via their databases. The institute undertakes systematic reviews evaluating research evidence on health and public health questions of national and international importance.

Proper citation: Centre for Reviews and Dissemination (RRID:SCR_010267) Copy   

•   Source: SciCrunch Registry

http://www.sbg.bio.ic.ac.uk/phyre2

A structure prediction system to reliably detect remote homologies.

Proper citation: Phyre (RRID:SCR_010270) Copy   

•   Source: SciCrunch Registry

http://www.biobase-international.com

THIS RESOURCE IS OUT OF SERVICE, documented on February 1st,2022. BIOBASE offers academic and non-profit organizations free access to TRANSFAC?? non-professional version with much reduced functionality and content compared to our professional database.

Proper citation: BIOBASE Corporation (RRID:SCR_010271) Copy   

•   Source: SciCrunch Registry

http://code.google.com/p/bitseq/

A software application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions.

Proper citation: BitSeq (RRID:SCR_009904) Copy   

•   Source: SciCrunch Registry

http://www.dol.gov/

Fosters, promotes, and develops the welfare of the wage earners, job seekers, and retirees of the United States; improves working conditions; advances opportunities for profitable employment; and assures work-related benefits and rights.

Proper citation: U.S. Department of Labor (RRID:SCR_010157) Copy   

•   Source: SciCrunch Registry

http://www.jhu.edu/

Johns Hopkins University is private research university in Baltimore, Maryland. Founded in 1876, university was named for its first benefactor, American entrepreneur, abolitionist, and philanthropist Johns Hopkins.

Proper citation: Johns Hopkins University; Maryland; USA (RRID:SCR_010247) Copy   

•   Source: SciCrunch Registry

http://vassarstats.net/

Tools for performing statistical computation including: Clinical Research Calculators Probabilities Distributions Frequency Data Proportions Ordinal Data Correlation & Regression t-Tests & Procedures ANOVA ANCOVA

Proper citation: VassarStats (RRID:SCR_010263) Copy   

•   Source: SciCrunch Registry

http://bioen-compbio.bioen.illinois.edu/TrueSight/

Self-training Algorithm for Splice Junction Detection using RNA-seq.

Proper citation: TrueSight (RRID:SCR_009835) Copy   

•   Source: SciCrunch Registry

http://www.rcsi.ie/

Private university responsible for the medical speciality of surgery throughout Ireland.

Proper citation: Royal College of Surgeons in Ireland; Dublin; Ireland (RRID:SCR_009786) Copy   

•   Source: SciCrunch Registry

http://www.kti.admin.ch/index.html?lang=en

Proper citation: Swiss Commission for Technology and Innovation (RRID:SCR_010084) Copy   

•   Source: SciCrunch Registry

http://compbio.dfci.harvard.edu/

A computational biology laboratory that builds and redistributes genetic software tools.

Proper citation: Computational Biology and Functional Genomics Laboratory at Harvard (RRID:SCR_010240) Copy   

•   Source: SciCrunch Registry

http://hkbic.cuhk.edu.hk/software/abmapper

A portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping. The core module was written in C++ and wrapped in PERL scripts.

Proper citation: ABMapper (RRID:SCR_010242) Copy   

•   Source: SciCrunch Registry

http://www.umassmed.edu/iscr/

A registry of stem cell lines that provides a searchable database that includes published and validated unpublished information on human embryonic (hESC) and disease-specific induced pluripotent (iPS) stem cell lines. The Registry will include information on cell lines from non-profit institutions, academic centers, stem cell banks and industry based in the United States and abroad. The International Stem Cell Registry is developed in partnership with and funded by the Massachusetts Life Sciences Center. The work of the registry is made possible by the MLSC and important collaborators, including the Harvard Stem Cell Institute.

Proper citation: International Stem Cell Registry (RRID:SCR_003653) Copy   

•   Source: SciCrunch Registry

http://roar.eprints.org/

Listing of institutional repositories for depositing preprints of published materials with the aim of promoting the development of open access by providing timely information about the growth and status of repositories throughout the world. Open access to research maximizes research access and thereby also research impact, making research more productive and effective. Repository Types: * Research Institutional or Departmental * Research Multi-institution Repository * Research Cross-Institutional * e-Journal/Publication * e-Theses * Database/A&I Index * Research Data * Open and Linked Data * Learning and Teaching Objects * Demonstration * Web Observatory * Other Repository Software: * ARNO * Bepress * CDS Invenio * ContentDM by OCLC * DIGIBIB * DigiTool * DiVA * DoKS * DSpace * EDOC * EPrints * Equella * ETD-db * Fedora ** Fez * Greenstone * HAL * i-Tor * IntraLibrary * Keystone DLS * MiTOS * MyCoRe * Open Journal System * Open Repository * OPUS (Open Publications System) * Other softwares (various) * PMB Services * SBCAT * SciX * SobekCM * WIKINDX * Zentity

Proper citation: ROAR (RRID:SCR_005951) Copy   

•   Source: SciCrunch Registry

http://www003.upp.so-net.ne.jp/pub/publications.html#sl

Software application for inkage disequilibrium grouping of single nucleotide polymorphisms (SNPs) reflecting haplotype phylogeny for efficient selection of tag SNPs. (entry from Genetic Analysis Software)

Proper citation: LDGROUP (RRID:SCR_006282) Copy   

•   Source: SciCrunch Registry

http://www.re3data.org/

Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use.

Proper citation: re3data.org (RRID:SCR_006782) Copy   

•   Source: SciCrunch Registry

http://www.lifelegacy.org

A non-profit tissue bank that facilitates the distribution of non-transplantable tissue to the medical and research community. It provides snap frozen low post mortem interval (PMI) tissue, normal and diseased tissue, plastinated specimens, anatomical specimens, and specialty specimens. The foundation also works to increase public awareness of research tissue donation for medical research.

Proper citation: LifeLegacy Foundation (RRID:SCR_000518) Copy   

•   Source: SciCrunch Registry