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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Measures of Effect Size Toolbox Resource Report Resource Website 1+ mentions |
Measures of Effect Size Toolbox (RRID:SCR_014703) | MES | data processing software, data analysis software, software application, software resource | Matlab statistics toolbox allowing the computation of a wide range of measures of effect size. Four main toolbox functions cover common analysis designs, including two-sample-, oneway- and twoway- data sets as well as categorical data. Data may be repeated-measures. | matlab, statistics toolbox, measure of effect size, effect size, common analysis design, data analysis software | PMID:22082031 | Available for download | SCR_014703 | MES Toolbox | 2026-08-01 12:05:07 | 2 | ||||||||
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Tool for Tumor Progression Resource Report Resource Website 1+ mentions |
Tool for Tumor Progression (RRID:SCR_014700) | TTP | software resource, software application, simulation software | Software used to simulate tumor progression in various stages of growth in order to study the process' dynamics. The input can be fitness landscape, mutation rate, and cell division time. The output is growth dynamics and other relevant statistics, such as expected tumor detection time and expected appearance time of surviving mutants. The tool is implemented in Java and runs on all operating systems which run a Java Virtual Machine (JVM) of version 1.7 or above. | tumor, tumor progression, cancer, simulation, simulation software, tumor dynamics, tumor growth | Cancer | Available for download, Necessary libraries are included in the file | SCR_014700 | Tool for Tumor Progression (TTP) | 2026-08-01 12:05:07 | 1 | ||||||||
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Australian Data Archive Resource Report Resource Website 1+ mentions |
Australian Data Archive (RRID:SCR_014706) | service resource, data repository, storage service resource | A consortium of leading national Australian universities which collects and preserves digital research data and makes these data available for secondary analysis. The consortium provides a data catalogue comprised of seven sub-archives: Social Science, HIstorical, Indigenous, Longitudinal, Qualitative, Crime and Justice, and International. All users can browse and search the catalogue, view study and variable documentation, and download related material. Registered users can also analyze and visualize most data online and users who have completed the relevant undertaking form(s) can download entire studies or subsets of variables. Deposited data are processed, reviewed, and published for research use. | data archive, data catalogue, australia, digital research data |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing |
Available to the research community | DOI:10.26193, DOI:10.17616/R3DS3K, DOI:10.25504/FAIRsharing.sN8d9i | https://doi.org/10.26193, https://dx.doi.org/10.26193, http://doi.org/10.17616/R3DS3K, https://fairsharing.org/10.25504/FAIRsharing.sN8d9i | SCR_014706 | 2026-08-01 12:05:16 | 7 | ||||||||
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NMRbox Resource Report Resource Website 50+ mentions |
NMRbox (RRID:SCR_014827) | software resource, software toolkit, web application | Computing platform for biomolecular NMR available to not-for-profit or government users. It consists of a virtual machine (VM) provisioned with dozens of widely-used NMR software packages, and is available as a cloud-based Platform-as-a-Service (PaaS) or as a downloadable VM for local execution. | Nuclear Magnetic Resonance, nmr, spectra, computing platform, platform, virtual machine, cloud, software toolbox | NIGMS P41GM111135 | Account required | SCR_014827 | , Nuclear Magnetic Resonance box, NMRbox.org | 2026-08-01 12:05:09 | 78 | |||||||||
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Webulous Resource Report Resource Website 1+ mentions |
Webulous (RRID:SCR_014825) | software resource, web application | Server used to create spreadsheets with ontology based data validations. Webulous can process populated templates and transform them into OWL/RDF using design patterns expressed in OPPL. It also has an add-on with Google spreadsheets which supports loading templates from a Webulous server and allows users to submit populated spreadsheets back to the Webulous server for transformation into OWL. | server, ontology, data validation, owl, spreadsheet | Available for installation | SCR_014825 | 2026-08-01 12:05:08 | 2 | |||||||||||
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neMESYS UserInterface Resource Report Resource Website |
neMESYS UserInterface (RRID:SCR_014793) | data acquisition software, software application, data processing software, software resource | Software used to configure and control up to 32 neMESYS syringe pumps. Its features include automatic detection of connected dosing units, graphical display of syringe size, syringe level and valve position, configurable SI units for volumes and flow rates, and real-time display of all current values like flow rate, syringe fill level or dispensed volume. | nemesys, user interface, syringe, system control software | Commercially available | SCR_014793 | nemesys UserInterface, nemesys User Interface | 2026-08-01 12:05:08 | 0 | ||||||||||
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Hierarchical Clustering Resource Report Resource Website 1+ mentions |
Hierarchical Clustering (RRID:SCR_014673) | data analysis software, source code, software application, software resource, data processing software | R documentation for hierarchical cluster analysis on a set of dissimilarities for n objects. Each object is assigned to its own cluster, which an algorithm proceeds through iteratively. Two of the most similar clusters are joined at each stage until there is a single cluster. Distances between clusters are recomputed at each stage by the Lance–Williams dissimilarity update formula according to the particular clustering method being used. Clustering methods include: Ward's minimum variance method, complete linkage method, and single linkage method. | statistical analysis, statistical analysis package, r, r package, data analysis, software, cluster, hierarchical, dissimilarity, clustering method, metabolomics | is listed by: Metabolomics Workbench | Acknowledgement requested | SCR_014673 | R: Hierarchical Clustering, R - Hierarchical Clustering | 2026-08-01 12:05:07 | 4 | |||||||||
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Zeitzeiger Resource Report Resource Website 10+ mentions |
Zeitzeiger (RRID:SCR_014791) | data acquisition software, software application, data processing software, software resource | R package for regularized supervised learning on high-dimensional data from an oscillatory system. Zeitzeiger can quantify rhythmic behavior, make accurate predictions, identify major patterns and important features, and detect when the oscillator is perturbed. | r, data acquisition software, rhythm, behavior, predict, oscillatory system, high dimensional data, regularized supervised learning | Available for download | SCR_014791 | ZeitZeiger | 2026-08-01 12:05:08 | 13 | ||||||||||
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Principal Components Analysis Resource Report Resource Website 10+ mentions |
Principal Components Analysis (RRID:SCR_014676) | data analysis software, source code, software application, software resource, data processing software | R documentation for a function that performs a principal components analysis on a given data matrix and returns the results as an object of class prcomp. | statistical analysis, statistical analysis package, r, r package, principal component analysis, data matrix, prcomp, metabolomics | is listed by: Metabolomics Workbench | SCR_014676 | 2026-08-01 12:05:06 | 14 | |||||||||||
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La Jolla Institute for Immunology Bioinformatics Core Facility Resource Report Resource Website |
La Jolla Institute for Immunology Bioinformatics Core Facility (RRID:SCR_014831) | core facility, service resource, access service resource | Core Facility provides support for short or long-term projects requiring expertise the analysis of biological datasets. The services provided include the analysis of large-scale datasets (e.g. next-gen sequencing data, microarrays, etc.), the development of customized databases and reusable analysis pipelines, guidance on experimental design, support with technical sections of manuscripts and grants, and training on analysis software packages. All services are charged at our hourly rate. | immunology, core facility, la jolla, bioinformatics, core facility, data analysis, pipeline development, technical, statistical, review, training | has parent organization: La Jolla Institute for Immunology | Available to external user | http://livesite.liai.org/pages/core_bioinformatics | SCR_014831 | , Institute for Immunology, La Jolla Institute; La Jolla Institute for Allergy and Immunology Bioinformatics Core;La Jolla Institute for Allergy and Immunology Bioinformatics Core Facility | 2026-08-01 12:05:08 | 0 | ||||||||
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Linear Discriminant Analysis Resource Report Resource Website |
Linear Discriminant Analysis (RRID:SCR_014675) | data analysis software, source code, software application, software resource, data processing software | R documentation for a function to perform linear discriminant analysis; specifically, to detect if the within-class covariance matrix is singular. | statistical analysis, statistical analysis package, r, r package, linear disciminant analysis, covariance, matrix, linear discriminant analysis, data analysis software, metabolomics | is listed by: Metabolomics Workbench | SCR_014675 | 2026-08-01 12:05:16 | 0 | |||||||||||
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Xperiment Resource Report Resource Website 1+ mentions |
Xperiment (RRID:SCR_014712) | mobile application, data analysis software, data acquisition software, software application, software resource, data processing software | Mobile software application for behavioral social science experiments on an online platform. It can be used on computers, tablets, and smartphones. It is hardware independent, does not require online connectivity to perform a test, and has the option of interfacing with outside sensors, such as heart rate or weighting scales. | mobile, application, portable, behavioral science, online, social science | Free for the academic community, Fee for commercial organization | SCR_014712 | 2026-08-01 12:05:07 | 3 | |||||||||||
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Association of the Scientific Medical Societies in Germany Resource Report Resource Website |
Association of the Scientific Medical Societies in Germany (RRID:SCR_014716) | AWMF | group | An association of various medical entities in Germany. The organization advises on matters and tasks of fundamental and interdisciplinary interest in medicine, develops recommendations and resolutions and represents them at the institutions occupied with such tasks, such as research strategies, education, and postgraduate training. | germany, medicine, interdisciplinary, research | SCR_014716 | Arbeitsgemeinschaft der Wissenschaftlichen Medizinischen Fachgesellschaften | 2026-08-01 12:05:16 | 0 | ||||||||||
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DeviumWeb Resource Report Resource Website 10+ mentions |
DeviumWeb (RRID:SCR_014683) | data visualization software, software toolkit, data analysis software, software application, software resource, data processing software | A software suite for data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis and visualization (such as principal component analysis), predictive modeling and biochemical pathway analysis. | metabolomics, metabolomics tool, data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis, visualization, principal component analysis, predictive modeling, biochemical pathway analysis | is listed by: Metabolomics Workbench | Subscription required, 30-day demo available | http://dgrapov.github.io/DeviumWeb/ | SCR_014683 | 2026-08-01 12:05:16 | 12 | |||||||||
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Salk Institute Behavior Testing Core Facility Resource Report Resource Website |
Salk Institute Behavior Testing Core Facility (RRID:SCR_014840) | BTC | core facility, service resource, access service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5th,2024. Core facility that provides the resources to investigate sensory, motor and complex behavioral testing in rat and mouse models. The facility offers standard neurobehavioral tests, customized test batteries, training for independent use of the equipment, data interpretation and anlaysis. | core facility, la jolla, behavioral, behavior, sensory, motor, neurobehavioral, test, rat, mouse | Salk Institute Behavior Testing Core Facility ; NINDS Neuroscience Core Grant |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014840 | 2026-08-01 12:05:09 | 0 | |||||||||
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NBRP Medaka Pattern Match Resource Report Resource Website 1+ mentions |
NBRP Medaka Pattern Match (RRID:SCR_018157) | data or information resource, database, service resource, production service resource, analysis service resource | Web medaka pattern match tool for short sequence and/or pattern. Used to search database of medaka genome on target and off target sites when editing genome with CRISRP-Cas9. | Medaka, pattern match tool, short sequence, pattern, medaka genome, target site, off target site, editing genome, CRISP-Cas9 | has parent organization: Kyoto University; Kyoto; Japan | Free, Freely available | SCR_018157 | 2026-08-01 12:05:55 | 3 | ||||||||||
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Mizar Imaging: Tilt High Resolution Light Sheet Imaging System Resource Report Resource Website |
Mizar Imaging: Tilt High Resolution Light Sheet Imaging System (RRID:SCR_018156) | instrument resource | Modular light sheet illumination system designed to image living samples with minimal photobleaching or phototoxicity by Mizar Imaging. Enables high spatial and temporal resolution light sheet imaging to be added to existing or new microscope system. | Mizar Imaging, light sheet imaging, modular homology, illumination system, image living sample, minimal photobleaching, minimal phototoxicity, microscope system, instrument, equipment | Restricted | https://www.mizarimaging.com/wp-content/uploads/2018/11/Tilt-Datasheet-3.pdf | SCR_018156 | Tilt | 2026-08-01 12:06:18 | 0 | |||||||||
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S2 Genomics: Singulator 100 Automated Single Cell Prep Automated System Resource Report Resource Website 1+ mentions |
S2 Genomics: Singulator 100 Automated Single Cell Prep Automated System (RRID:SCR_018155) | instrument resource | Singulator to automate tissue preparation for single cell and single nucleus analyses. Bench top Singulator System and single use cartridge enable tissue dissociations into singulated cells or nuclei suspensions. | S2 Genomics, automated cell preparation, tissue preparation, single cell, single nucleus analysis, benchtop, singulator system, single use cartridge, singulated cell suspension, singulated nuclei suspension, instrument, equipment | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018155.pdf | https://s2genomics.com/wp-content/uploads/2022/08/S2-Genomics-Singulator-100-Brochure-v220804.pdf | SCR_018155 | S2 Genomics Singulator, S2 Genomics Singulator 100, Singulator 100 | 2026-08-01 12:06:11 | 1 | ||||||||
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YXLON: FF35 CT Resource Report Resource Website 1+ mentions |
YXLON: FF35 CT (RRID:SCR_018208) | instrument resource | Computed tomography system designed to achieve precise inspection results for wide range of applications by YXLON. Available in single or dual tube configuration, it is perfect for very small to medium sized parts inspection in automotive, electronics, aviation, and material science industries. | Computed tomography system, instrument, equipment | Restricted | https://etek-aero.com/wp-content/uploads/2022/09/FF35-CT_Brochure_en-LR-1.pdf | SCR_018208 | 2026-08-01 12:05:56 | 1 | ||||||||||
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Black Zen software Resource Report Resource Website 100+ mentions |
Black Zen software (RRID:SCR_018163) | image analysis software, software application, software resource, data processing software, image processing software | Software used to analyze images obtained from microscope. ZEN Black is software Zeiss uses to run their laser-based instruments. | Free, Available for download, Freely available | http://microscopy.arizona.edu/sites/default/files/sites/default/files/upload/Installing%20the%20free%20Zeiss%20ZEN%20software%20on%20a%20Windows%20PC%20%28rev2018%29.pdf | SCR_018163 | ZEISS ZEN Microscope Software, Black Zen software (ZEISS), ZEN Black | 2026-08-01 12:06:18 | 153 |
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