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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Crystallography and NMR System (CNS) Resource Report Resource Website 1+ mentions |
Crystallography and NMR System (CNS) (RRID:SCR_014223) | CNS | data visualization software, software toolkit, software application, data processing software, software resource | Software designed to provide a multi-level hierachical approach for the most commonly used algorithms in macromolecular structure determination. Features include heavy atom searching, experimental phasing (including MAD and MIR), density modification, crystallographic refinement with maximum likelihood targets, and NMR structure calculation using NOEs, J-coupling, chemical shift, and dipolar coupling data. Modules, libraries, utility programs, tutorials, and a syntax manual are available on the website. | structure determination, software suite, macromolecular structure determination, data visualization software, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Yale University; Connecticut; USA |
PMID:9757107 | Available to academic institutions, Request form must be submitted | biotools:cnssolve | https://bio.tools/cnssolve | SCR_014223 | Crystallography and NMR System | 2026-08-01 12:05:09 | 8 | |||||
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Wisconsin Cortical Thickness Analysis (CTA) Toolbox Resource Report Resource Website |
Wisconsin Cortical Thickness Analysis (CTA) Toolbox (RRID:SCR_014180) | software toolkit, data analysis software, software application, software resource, data processing software | A Matlab tool to perform statistical analysis on cortical thickness signals on brain surfaces obtained from Freesurfer. It is used for multi-resolutional analysis of such cortical thickness signals and detecting group differences. It is based on the Spectral Graph Wavelet Transform (SGWT) toolbox and provides plug and play methods for deriving Wavelet Multiscale Descriptor (WMD), cortical thickness smoothing using SGWT, Multivariate General Linear Model (MGLM), and False Discovery Rate (FDR). | matlab, software toolkit, cortical thickness signal, data analysis software |
uses: FreeSurfer is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Wisconsin Partnership Program ; NIA R01AG040396; NIA R01AG021155; NSF RI 1116584; NSF CAREER 1252725; UW ADRC NIA P50 AG033514; UW ICTR NCRR 1UL1RR025011; NIA P30 AG010129; NIA K01 AG030514 |
http://pages.cs.wisc.edu/~wonhwa/code/CTA_toolbox.html, http://pages.cs.wisc.edu/~wonhwa/project/ctdiscrim.html | SCR_014180 | 2026-08-01 12:05:08 | 0 | |||||||||
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BraTumIA (Brain Tumor Image Analysis) Resource Report Resource Website 10+ mentions |
BraTumIA (Brain Tumor Image Analysis) (RRID:SCR_014184) | image analysis software, segmentation software, software application, software resource, data processing software | Segmentation software for multimodal image analysis of brain tumor studies. It performs volumetric segmentation of healthy and tumor tissues by employing multispectral MRI sequences. Segmented tissues include Gray Matter, White Matter, Cerebrospinal Fluid, necrotic core, edema, non-enhancing tumor and enhancing tumor. | segmentation software, image analysis, brain tumor, volumetric segmentation, mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is affiliated with: Cancer Imaging Archive (TCIA) |
Free for non-commercial use only | SCR_014184 | BraTumIA | 2026-08-01 12:04:59 | 13 | |||||||||
|
OpenViBE Resource Report Resource Website 50+ mentions |
OpenViBE (RRID:SCR_014156) | data visualization software, software toolkit, data acquisition software, software application, data processing software, software resource | A multi-platform software dedicated to designing, testing and using brain-computer interfaces (BCI). OpenViBE is a software for real-time neurosciences that can be used to acquire, filter, process, classify and visualize brain signals in real time. | software toolkit, multi platform, brain computer interface, real time | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Public, Available to the research community | http://openvibe.inria.fr | SCR_014156 | 2026-08-01 12:04:58 | 97 | |||||||||
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Northwestern University Schizophrenia Data and Software Tool (NUSDAST) Resource Report Resource Website |
Northwestern University Schizophrenia Data and Software Tool (NUSDAST) (RRID:SCR_014153) | NUSDAT | image collection, data or information resource, database | A repository of schizophrenia neuroimaging data collected from over 450 individuals with schizophrenia, healthy controls and their respective siblings, most with 2-year longitudinal follow-up. The data include neuroimaging data, cognitive data, clinical data, and genetic data. | database, neuroimaging, clinical, cognitive, genetic, schizophrenia, longitudinal |
uses: CAWorks is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Northwestern University; Illinois; USA |
Schizophrenia | NIMH 1R01 MH084803; NIMH 1U01 MH097435; NIMH P50 MH071616; NIMH R01 MH056584; NCRR P41 RR15241; NIGMS U24 GM104203; NIH Bio-Informatics Research Network Coordinating Center |
Available to the research community | SCR_014153 | Northwestern University Schizophrenia Data and Software Tool | 2026-08-01 12:05:08 | 0 | ||||||
|
OpenWalnut Resource Report Resource Website |
OpenWalnut (RRID:SCR_014157) | data visualization software, software application, data processing software, software resource | Open source tool for multi-modal medical and brain data visualization. It is a tool for the scientific user and a powerful framework for the visualization researcher. It is written in Standard C++ and uses a number of portable libraries (e.g. Qt, Boost and OpenSceneGraph). It runs on common GNU/Linux operating systems, Mac OSX and Windows. | open source, data visualization software, brain data, medical tool |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian |
Free, Available for download, Freely available | http://www.openwalnut.org, https://sources.debian.org/src/openwalnut-qt4/ | SCR_014157 | 2026-08-01 12:04:58 | 0 | |||||||||
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Orientation Distribution Function in Constant Solid Angle (CSA-ODF) Resource Report Resource Website |
Orientation Distribution Function in Constant Solid Angle (CSA-ODF) (RRID:SCR_014158) | CSA ODF | data visualization software, software toolkit, software application, data processing software, software resource | A Matlab toolbox that computes the Q-Ball Imaging Orientation Distribution Function in Constant Solid Angle (CSA-ODF) for diffusion-weighted MRI. | matlab, toolbox, imaging orientation, diffusion weighted mri, image reconstruction, modeling |
uses: MATLAB is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
Available to the research community | SCR_014158 | Orientation Distribution Function in Constant Solid Angle | 2026-08-01 12:05:08 | 0 | ||||||||
|
NiiStat Resource Report Resource Website 50+ mentions |
NiiStat (RRID:SCR_014152) | data analysis software, source code, software application, software resource, data processing software | A set of Matlab scripts for analyzing neuroimaging data from clinical populations. The NiiStat tools are designed to correlate behavioral data (task performance) with brain imaging data. | matlab script, source code, data analysis, neuroimaging data, clinical population |
uses: MATLAB is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Medical University of South Carolina; South Carolina; USA |
Available to the research community | http://www.nitrc.org/plugins/mwiki/index.php/niistat:MainPage | SCR_014152 | 2026-08-01 12:04:58 | 77 | |||||||||
|
MassLynx Resource Report Resource Website 5000+ mentions |
MassLynx (RRID:SCR_014271) | data analysis software, data management software, data acquisition software, software application, data processing software, software resource | Software which can acquire, analyze, manage, and share mass spectrometry data. MassLynx controls any Waters mass spectrometry system, from sample and solvent management components to mass spectrometer and auxiliary detectors. The software can acquire nominal mass, exact mass, MS/MS and exact mass MS/MS data. The software system also maintains and consolidates all user sample data. Optional Application Manager programs provide additional information for specific MS analyses and data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | data acquisition software, data analysis software, data management software, mass spectrometry | is listed by: SoftCite | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014271 | MassLynx MS Software | 2026-08-01 12:05:00 | 5802 | |||||||||
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Ruby NIfTI Resource Report Resource Website |
Ruby NIfTI (RRID:SCR_014164) | software resource, software library, software toolkit | A library for handling NIfTI data in the Ruby programming language. Ruby NIfTI supports basic read and write access to NIfTI files, including basic and extended header information and image information. It doesn't attempt to touch the image data but it does provide access to qform and sform orientation matrices. It also provides a nice interface to get at NIfTI info from within Ruby. | nifti library, ruby, nifti |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Harvard University; Cambridge; United States |
https://github.com/brainmap/nifti | SCR_014164 | 2026-08-01 12:05:08 | 0 | ||||||||||
|
SCORE Resource Report Resource Website 100+ mentions |
SCORE (RRID:SCR_014165) | experimental protocol, narrative resource, data or information resource | A collection of methods for comparing the performance of different image algorithms. These methods generate quantitative scores that measure divergences to a standard. | experiment protocol, method, different image algorithm, quantitative score |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Utah; Utah; USA |
NLM HHSN276201000584P; NIBIB 1R41 EB011796 |
SCR_014165 | 2026-08-01 12:05:08 | 458 | ||||||||||
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Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data Resource Report Resource Website |
Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data (RRID:SCR_014163) | image analysis software, data analysis software, software application, software resource, data processing software | An implementation of standard PCA algorithms for use on scalar or vector data sets. Kernel PCA is implemented in this class, where the data sets are scalar or vector valued functions assigned at each of the points in a PointSet. A Gaussian Distance Kernel class is provided with the PCA class. | pca algorithm, shape analysis, data analysis software, scalar data set, vector data set |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Johns Hopkins University; Maryland; USA |
Available to the research community | SCR_014163 | 2026-08-01 12:04:58 | 0 | ||||||||||
|
PsyGeNET Resource Report Resource Website 10+ mentions |
PsyGeNET (RRID:SCR_014406) | data or information resource, data analysis software, database, software application, software resource, data processing software | Knowledge platform on psychiatric disorders and their genes. Resource for exploratory analysis of psychiatric diseases and their associated genes. PsyGeNET is composed of database and set of analysis tools and is the result of the integration of information from DisGeNET and data extracted from the literature by text mining, followed by curation by domain experts. | psychiatric disease, associated gene, database, analysis tool, bio.tools |
is used by: DisGeNET is listed by: Debian is listed by: bio.tools |
Psychiatric disorder | DOI:10.1093/bioinformatics/btv301 | Available for the research community | biotools:psygenet2r | https://bio.tools/psygenet2r | SCR_014406 | Psychiatric disorders Gene association NETwork, Psychiatric disorders Gene association Network | 2026-08-01 12:05:02 | 11 | |||||
|
Lifestyle Interventions for Expectant Moms (LIFE-Moms) Resource Report Resource Website |
Lifestyle Interventions for Expectant Moms (LIFE-Moms) (RRID:SCR_014376) | LIFE-Moms | portal, organization portal, resource, data or information resource | A consortium whose overall goal is to identify effective behavioral and lifestyle interventions that will improve weight, glycemic control and other pregnancy-related outcomes in obese and overweight pregnant women, and determine whether these interventions reduce obesity and metabolic abnormalities in their children. The study/consortium is comprised of seven clinical centers, with each clinical center conducting its own trial. Additional information on the consortium and individual trials is located in the Consortium Summaries tab. | pregnant, pregnancy, obesity, metabolic abnormality, behavioral intervention, lifestyle intervention, clinical trial |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources |
Obesity | NIDDK ; NHLBI ; NICHD ; National Center for Complementary and Integrative Health ; Office of Research on Womens Health ; Office of Behavioral and Social Sciences Research |
Synopses available, Users may access trial data at clinicaltrial.gov | http://www.niddk.nih.gov/research-funding/research-resources/Pages/default.aspx | SCR_014376 | Lifestyle Interventions for Expectant Moms | 2026-08-01 12:05:11 | 0 | |||||
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Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) Resource Report Resource Website |
Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) (RRID:SCR_014378) | LURN | resource | A research consortium with the long term goal of developing and testing measurement tools to describe symptoms of lower urinary tract dysfunction (LUTD) in women and men. The group plans to study targeted populations of patients with LUTD in order to expand our understanding of the causes of symptoms and common ways that symptoms change over time. The researchers will also collect biosamples from patients for current and future study of LUTD. | lower urinary tract, dysfunction, research, consortium, lutd, symptom, biosample |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology |
NIDDK 1U01DK097776 | SCR_014378 | Symptoms of Lower Urinary Tract Dysfunction Research Network | 2026-08-01 12:05:01 | 0 | ||||||||
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Muse: Portable Scalp EEG Device (Muse S Athena) Resource Report Resource Website 100+ mentions |
Muse: Portable Scalp EEG Device (Muse S Athena) (RRID:SCR_014418) | software resource, software application, mobile app, instrument resource | It is a portable scalp electroencephalography (EEG) system that can be used to measure brain activity. It is battery powered and has four active electrodes located at 10-20 coordinates TP9, AF7, AF8, and TP10, a common mode reference, and a driven right leg. It includes an accelerometer and gyroscope, and works with desktop and mobile EEG acquisition and visualization software. Muse 2 expands upon the first model with increasingly robust hardware. | portable, scalp electroencephalography, brain activity, mobile app, data acquisition software, data analysis software | Ontario Centres of Excellence ; Natural Sciences and Engineering Research Council of Canada |
DOI:10.1371/journal.pone.0130129 | Public, Commercial product, Headband requires purchase, App is free | SCR_014418 | , Muse 2, Muse: the brain sensing headband | 2026-08-01 12:05:02 | 321 | ||||||||
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FlexField Software Resource Report Resource Website 1+ mentions |
FlexField Software (RRID:SCR_014420) | software resource, software application, systems interoperability software, standalone software | Transformation software designed to help model and change Oracle account charts. This can be used to reorganize Oracle accounts due to events such as mergers, acquisitions, regulatory requirements and the need for more ranges when the data outgrows the range of the current chart of accounts. FlexField transforms an existing accounting flexfield segment structure, values, code combinations, and CCIDs according to user mappings, and applies the new code combinations and CCIDs. It propagates the change throughout an existing E-Business Suite data, everywhere the accounting flexfield is used. It removes the old code combinations and CCIDs, and aligns the new Chart of Accounts (COA) so that all balances belonging to a single CCID are summarized into a single line. | software, oracle, ccid, account chart, segment structure, accounting, chart of accounts | Commercial product, License fee | SCR_014420 | 2026-08-01 12:05:02 | 2 | |||||||||||
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Clinical Islet Transplantation Consortium (CITC) Resource Report Resource Website 1+ mentions |
Clinical Islet Transplantation Consortium (CITC) (RRID:SCR_014385) | CITC, CIT | service resource, access service resource | Network of clinical centers and a data coordinating center established to conduct studies of islet transplantation in patients with type 1 diabetes. | type 1 diabetes, consortium, network, islet transplantation, clinical |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is listed by: Diabetes Research Centers |
Type 1 diabetes, Diabetes | NIDDK U01 DK070431; NIAID |
SCR_014385 | Clinical Islet Transplantation Consortium | 2026-08-01 12:05:02 | 1 | |||||||
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Navios Software Resource Report Resource Website 1+ mentions |
Navios Software (RRID:SCR_014421) | data analysis software, data acquisition software, software application, software resource, data processing software | Used in tandem with the Navios Flow Cytometer in order to acquire data for use in analyzing cellular characteristics. | flow cytometry, machine software, control software, data analysis software, data acquisition software, lymphocyte, multicolor | Commercial product | http://www.beckman.com/coulter-flow-cytometry/instruments/flow-cytometers/navios | SCR_014421 | Navios Tetra Software | 2026-08-01 12:05:02 | 3 | |||||||||
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BD Accuri C6 Plus Resource Report Resource Website 50+ mentions |
BD Accuri C6 Plus (RRID:SCR_014422) | data analysis software, data acquisition software, software application, software resource, data processing software | Software used for collecting and analyzing flow cytometry data. Files can be exported in FCS 3.1 format for import into other flow cytometry analysis programs such as FCS Express™ software and FlowJo™ software. | data analysis software, data acquisition software, flow cytometry, flow cytometry analysis program | Commercial product | SCR_014422 | 2026-08-01 12:05:12 | 53 |
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