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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
http://health.usf.edu/publichealth/biodef/index.htm
An institutional resource focusing on biological defense and infectious disease research. The institution teaches preparation and response to catastrophes, especially bioterrorism preparedness, to local communities and conducts research in detecting and fighting biological agents and infectious diseases.
Proper citation: University of South Florida Center for Biological Defense (RRID:SCR_013749) Copy
Software tool for reformatting abstracts from original submission formats into a text encoding format for publishing on-line and book abstracts.
Proper citation: DH Writer (RRID:SCR_013753) Copy
http://statpages.org/javasta2.html
A software registry which offers links to various free statistical software programs for stand-alone computing. The software programs are split into different categories: General Packages, Subset Packages, Curve Fitting and Modeling, Biostatistics and Epidemiology, Surveys, Testing and Measurement, Excel Spreadsheets and Add-ins, Programming Languages and Subroutine Libraries, Scripts and Macros, Miscellaneous, and Other Collections.
Proper citation: Free Statistical Software (RRID:SCR_013834) Copy
A web application which provides the framework for collaborative preparation and publication of computational experiments that can back executable papers. The Collage environment enables researchers to embed chunks of executable code and data into scientific publications and facilitate repeated execution of such codes on underlying computing and data storage resources. Executable papers made with Collage can be embedded into a web site.
Proper citation: Collage Authoring Environment (RRID:SCR_014008) Copy
A database and storage service resource which allows users to create, view, share, and download information from companion websites. RunMyCode allows users to create companion websites for their scientific publications. Users can share and download computer code and data from companion websites made with RunMyCode. Any software and data format is compatible with RunMyCode.
Proper citation: RunMyCode (RRID:SCR_014011) Copy
A peer review management system which encourages timely and high quality peer review by using a credit system. Reviewers complete reviews using a general webform on academickarma.org, and if that review is submited to an editor within ten days, the reviewer is awarded a certain amount of points (karma credits). The author and editor both receive the review. Editors can use Academic Karma to identify specialized reviewers for future reference. A reviewer's personal profile, which includes the amount of karma credits they've received, is connected to their ORCID account and publication record for an overview of the reviewer's work.
Proper citation: Academic Karma (RRID:SCR_014017) Copy
http://www.journalreviewer.org
A database which allows researchers to view and comment on the logistics of scientific journals' review processes. JournalReviewer collects and aggregates feedback from users who have submitted manuscripts to journals in order to provide information for others considering journal submissions. Statistics such as turnaround rate, review length and quality, journal recommendations, and desk reject plausabilities are compiled from commentors' ratings.
Proper citation: JournalReviewer (RRID:SCR_014014) Copy
A database where researchers can read and post reviews of publishing experiences with scientific journals. When writing comments, reviewers are adivsed to provide facts where possible, be specific, be honest, check the review, and offer constructive criticism when writing a negative report. Journalysis collates submitted reviews and data for each journal and provides useful summary information (metrics). Authors wanting to find out more about specific journals can search its databases and find the best journal for their next manuscript submission. Journals can use these reviews and metrics to demonstrate high publishing standards, or to improve standards where reviews may be negative.
Proper citation: Journalysis (RRID:SCR_014015) Copy
http://www.nitrc.org/projects/cmind_py_2014/
A python toolbox for analysis of MRI images. It relies on calls to a number of widely tested algorithms from the FMRIB software library (FSL) and the advanced normalization tools (ANTS) to provide analysis of simultaneously acquired ASL/BOLD fMRI data. It was developed for analyzing the datasets collected as part of the Cincinnati MR Imaging of NeuroDevelopment (C-MIND) project.
Proper citation: CMIND PY (RRID:SCR_014097) Copy
A collection of concise summaries of scientific articles that link back to the physical article. Users can contribute resources to the site and may choose to provide a summary; if they do not, Useful Science will do so. Summaries are then tagged with the appropriate topic. Topics that relate to everday life such as health, fitness, nutrition, and sleep are the main focus of the site.
Proper citation: Useful Science (RRID:SCR_013968) Copy
A service resource which provides researchers with metrics around usage, captures, social media, citations, and mentions from various online research outlets. Plum Analytics pulls information from reserch outlets such as journal articles, books, videos, presentations, conference proceedings, datasets, and source code. Plum Analytics also collects metrics for labs, departments, and other research groups. PlumX is a product of Plum Analytics.
Proper citation: Plum Analytics (RRID:SCR_014023) Copy
https://www.plos.org/article-level-metrics
A portal which provides access to article level metrics, PLOS news, and videos and presentations. PLOS ALMs provides altmetrics for every article published in PLOS. Researchers can stay up-to-date with their published work and share information about the impact of their publications with collaborators, funders, institutions, and the research community at large.
Proper citation: PLOS Article-Level Metrics (RRID:SCR_014022) Copy
http://chgv.org/GenicIntolerance/
A gene-based score intended to help in the interpretation of human sequence data. The score is designed to rank genes in terms of whether they have more or less common functional genetic variation relative to the genome wide expectation given the amount of apparently neutral variation the gene has. A gene with a positive score has more common functional variation, and a gene with a negative score has less and is referred to as intolerant.
Proper citation: Residual Variation Intolerance Score (RVIS) (RRID:SCR_013850) Copy
Issue
A group resource which connects organizations to data scientists who produce accurate predictive models. Kaggle uses competition to incentivize data scientists to create the most accurate and precise predictive models for an organization’s sets of data. The data scientist or team of data scientists who creates the best model is awarded a prize and the organization receives the predictive model.
Proper citation: Kaggle (RRID:SCR_013852) Copy
A global network group resource which provides crowdsourcing services for “innovation solutions.” InnoCentive utilizes an innovation framework, called Challenge Drive Innovation, which is based on leveraging open innovation and crowdsourcing. Software tools are available for idea management, innovation management, and external crowdsourcing programs and competitions.
Proper citation: InnoCentive (RRID:SCR_013851) Copy
A collaboration tool which allows users to upload and share presentations, infographics, documents, videos, PDFs, and webinars. Individual slideshows are available for download and are easily uploaded to other websites and blogs.
Proper citation: SlideShare (RRID:SCR_013818) Copy
http://www.wiley.com/WileyCDA/Section/id-817760.html
A web application which provides article tools specifically for the chemistry journals Applied Organometallic Chemistry, Chemistry – An Asian Journal, Chirality, Journal of Heterocyclic Chemistry, and Journal of Physical Organic Chemistry. The addition of Smart Article to these journals allows researchers to search across all five journals and to index and browse facilities for detailed information on compounds.
Proper citation: Wiley Smart Article (RRID:SCR_013817) Copy
http://www.articleofthefuture.com/about
A web application which provides interactive and in depth reading of online scientific articles published in Elsevier. While reading an article, users can access interactive data sources such as Protein Viewer and Google Maps as well as links to references and databases. Prototypes for seven different scientific areas are currently available for more specific research, but all scientific disciplines are represented within Article of the Future.
Proper citation: Article of the Future (RRID:SCR_013812) Copy
A publishing company which aims to produce intellectual content as well as research platforms and intelligence solutions. Elsevier publishes works related to science, health, and technology in physical copies and online. The company also provides integrated technology and analytics which allows users to to interact with, manipulate, share, and extract informant from various resources.
Proper citation: Elsevier (RRID:SCR_013811) Copy
http://www.ncbi.nlm.nih.gov/pmc/about/pubreader/
A web application which serves as an alternate way to read scientific literature in PubMed Central and Bookshelf. PubReader features an easy-to-read multi-column display, a figure strip for access to figures, and a search function. It is designed especially to support reading on tablets and other smaller devices but is available for reading on laptops and desktops.
Proper citation: PubReader (RRID:SCR_013814) Copy
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