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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
A database which houses human subjects clinical trial data. NDCT currently contains data on 13,409 subjects and has access to data on 100,500 subjects from the NIMH Data Archive. Users can also sign up for news updates and watch video tutorials.
Proper citation: National Database for Clinical Trials related to Mental Illness (RRID:SCR_013795) Copy
https://www.leica-microsystems.com/products/microscope-software/details/product/leica-las-x-ls/
Software for image capture, processing and analysis with Leica fluorescence and confocal microscopes.
Proper citation: Leica Application Suite X (RRID:SCR_013673) Copy
https://drive.google.com/file/d/1hBdRU27fsVkioRZb_IY_8BGPwIi_2ipq/view?usp=drivesdk
Automated, high throughput microscale bioreactor system that replicates laboratory scale bioreactor performance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: Thermo Fisher: Sartorius: Ambr 15 Cell Culture Generation 2 (RRID:SCR_013797) Copy
Collaborative research network specializing in urological chronic pelvic pain disorders. Project involves conducting research primarily on interstitial cystitis/painful bladder syndrome and chronic prostatitis/chronic pelvic pain syndrome and involves researchers from multiple disciplines. MAPP Network includes researchers with clinical, epidemiological, and basic research expertise.
Proper citation: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain (RRID:SCR_013754) Copy
A software application which contains a collection of biomedical resources and assist in the management resources. Resources consist of clinical trials, publications, abstracts, patents, news and events. Users can search, save, and make notes on publications.
Proper citation: CaptoMe (RRID:SCR_013757) Copy
A web application which provides public access to scientific literature through text and data mining.
Proper citation: ContentMine (RRID:SCR_013760) Copy
A web application tool which visualizes papers collected in arXiv. Users can search for papers and create an interactive graph to organize their resources. The graph shows the relationships between papers, the dates they were published, and other relevant information. Papers can be tagged and graphs can be shared with colleagues.
Proper citation: Paperscape (RRID:SCR_013768) Copy
A web application containing Open Access journals and papers from multiple disciplines. Relevant resources are collected from all fields of research, from the natural and physical sciences to the social sciences and humanities. Users can search for journals and papers or expose their papers to a wider audience.
Proper citation: Paperity (RRID:SCR_013767) Copy
http://research.mssm.edu/cnic/tools-vias.html
A software application designed to allow multiple stacks of tiled optical sections obtained from Laser Scanning Microscopy to be integrated into a single volumetric dataset. VIAS allows the user to select the individual image stacks from disk and to adjust their relative position on the screen interactively. By using a global 3D coordinate system, users can manipulate stacks and execute the integration of the data after all the stacks of images have been correctly positioned. VIAS was designed with large datasets in mind. The current version of VIAS is Version 2.4, last updated on January 26, 2009.
Proper citation: Volume Integration and Alignment System (RRID:SCR_013800) Copy
A web application that recommends biomedical scientific articles based on articles saved to the users'''' library. Users can search the National Library of Medicine databases and store articles of interest in a cloud library, which can be accessed on a computer or mobile device and can be shared with colleagues.
Proper citation: PubChase (RRID:SCR_013769) Copy
A web application which allows users to access life science research articles in PDF format. Users can search across all affiliated institution's subscriptions. Tools are provided to manage papers, which include downloading citations and creating email alerts for new, relevant articles.
Proper citation: PubGet (RRID:SCR_013770) Copy
http://www.ccac.uni-koeln.de/index.htm
An institution and biomaterial supply resource which houses more than 3500 strains of algae. The majority of the strains are derived from freshwater/terrestrial habitats while 15% are representative of marine and brackish water strains. 15% of the strains are axenic. 50% of the strains are currently available to the public and can be ordered from the CCAC's main site.
Proper citation: Culture Collection of Algae at the University of Cologne (RRID:SCR_013772) Copy
http://bangaloreuniversity.ac.in
An institution located in Bangalore focused on higher education. The university has established Gandhi Bhavan, Dr. B.R. Ambedkar Study and Research Centre, and Centre for Study of Social Exclusion and Inclusive policy as well as schools of biological sciences, social sciences, and business studies.
Proper citation: Central College of Bangalore (RRID:SCR_013774) Copy
https://www.itntrialshare.org/
Immune tolerance data management and visualization portal for studies sponsored by Immune Tolerance Network (ITN) and collaborating investigators. Data from published studies are accessible to any user; data from current in-progress studies are accessible to study investigators and collaborators. Includes links to published Figures, tools for visualization and analysis of data, and ability to query study data by subject, group, or any other study parameter.
Proper citation: Immune Tolerance Network TrialShare (RRID:SCR_013699) Copy
https://www.usaspending.gov/Pages/Default.aspx
Database of resources receiving federal financial assistance of more than $25,000. The Federal Funding Accountability and Transparency Act of 2006 was mandated to provide the public access to information regarding organizations and other entities receiving federal funding.
Proper citation: USAspending.gov (RRID:SCR_013738) Copy
http://www.bmnh.org.cn/Html/List/list48.html
A museum whose three main focuses are its specimen collection, academic research, and the popularization paleontology, zoology, botany, and anthropology.
Proper citation: Beijing Natural History Museum (RRID:SCR_013744) Copy
http://hbatlas.org/pages/publications
A research paper with supplementary materials reporting the generation and analysis of exon-level transcriptome and associated genotyping data. The experiment represented both males and females of multiple ethnicities and examines gene regulation and expression in different areas of the brain. A data set on the human brain transcriptome as well as insights into the transcriptional foundations of human neurodevelopment is provided.
Proper citation: Spatio-temporal transcriptome of the human brain (RRID:SCR_013743) Copy
http://www.cyto.purdue.edu/flowcyt/software/Winmdi.htm
Software to analyze flow cytometry listmode data files.
Proper citation: WinMDI Software (RRID:SCR_013745) Copy
An institutional resource focusing on research in biotechnology. Their goals include becoming a reliable reference in the biotechnological field and improving the performance and professionalism of research institutes.
Proper citation: Biotechnology Culture Collection Institution Pusat Penelitian dan Pengembangan Bioteknologi-LIPI (RRID:SCR_013748) Copy
A non-governmental wildlife research institution involved in the conservation of nature, primarily biological diversity and threatened species through action based on research, education and public awareness. Contains publications, collections, and educational materials as well as information on current research.
Proper citation: Bombay Natural History Museum (RRID:SCR_013747) Copy
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