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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Zeiss: Axio Observer 3 Resource Report Resource Website |
Zeiss: Axio Observer 3 (RRID:SCR_023693) | instrument resource | Inverted microscope Axio Observer 3 for transmitted light brightfield LED and differential interference contrast. Used for demanding multimodal imaging. | USEDit, instrument, equipment, microscope | is listed by: USEDit | Restricted | Model_Number_Axio_Observer_3 | SCR_023693 | Zeiss Axio Observer 3 microscope | 2026-07-25 12:10:33 | 0 | ||||||||
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Standard BioTools Resource Report Resource Website 100+ mentions |
Standard BioTools (RRID:SCR_023606) | commercial organization | American company engaged in design, manufacture and sale of biological research equipment based on integrated fluidic circuit technology. Founders leveraged their semiconductor experience to create integrated circuits that carried fluids rather than electrons. | American company, integrated fluidic circuit technology, semiconductor, integrated circuits, fluids | SCR_023606 | Standard BioTools Inc. | 2026-07-25 12:10:31 | 470 | |||||||||||
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Ionpath Resource Report Resource Website 1+ mentions |
Ionpath (RRID:SCR_023605) | commercial organization | Pioneer in high definition spatial proteomics, tissue imaging and analysis to accelerate medical discovery and improve human health. With MIBI technology and expertise of pathology and data science teams, Ionpath provides actionable insights to translational and clinical researchers at leading pharmaceutical, biotechnology, and research organizations in immuno-oncology, immunology, neuroscience, and infectious disease research. | high definition spatial proteomics, tissue imaging and analysis, | is related to: Ionpath: MIBIscope System | SCR_023605 | Inc., Ionpath | 2026-07-25 12:10:30 | 2 | ||||||||||
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Keyence Resource Report Resource Website 1+ mentions |
Keyence (RRID:SCR_023604) | commercial organization | Direct sales organization that develops and manufactures automation sensors, vision systems, barcode readers, laser markers, measuring instruments, and digital microscopes. Founder Takemitsu Takizaki. Headquarters Osaka, Osaka, Japan. | Japan, Takemitsu Takizaki, automation sensors, vision systems, barcode readers, laser markers, measuring instruments, digital microscopes | SCR_023604 | 2026-07-25 12:10:33 | 2 | ||||||||||||
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JAX Animal Behavior System Resource Report Resource Website |
JAX Animal Behavior System (RRID:SCR_023721) | JABS | software resource | Video based phenotyping platform for laboratory mouse. Provides complete details of software and hardware, including 3D designs used for data collection. Data acquisition system consists of video collection hardware and software, behavior labeling and active learning app, and online database for sharing classifiers. Hardware and software solution collects high quality data for behavior analysis. | OpenBehavior, data acquisition system, integrated mouse phenotyping platform, behavior analysis, | is listed by: OpenBehavior | Jackson Laboratory Directors Innovation Fund ; NIDA DA041668; NIDA DA048634 |
DOI:10.1101/2022.01.13.476229 | Free, Available for download, Freely available | SCR_023721 | 2026-07-25 12:10:33 | 0 | |||||||
|
Nikon: XT H 225 ST uCT system Resource Report Resource Website 1+ mentions |
Nikon: XT H 225 ST uCT system (RRID:SCR_023687) | instrument resource | Provides insight into the inside of components and specimens, allowing users to visualize, analyze and measure complex internal geometry as well as surfaces, all non-destructively. Versatile microfocus CT system for high resolution inspection in R&D and failure analysis of components ranging from tiny plastic connectors up to aluminum castings. | USEDit, instrument, equipment, microfocus CT system, high resolution components inspection, components inspection, | Restricted | SCR_023687 | Nikon XTH 225 ST microfocus Computer Tomography system | 2026-07-25 12:10:33 | 2 | ||||||||||
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Andor Resource Report Resource Website 10+ mentions |
Andor (RRID:SCR_023609) | commercial organization | Provides development and manufacture of high performance scientific digital cameras, microscopy systems and spectrographs for academic, industrial and government applications. | Oxford Instruments, high performance scientific digital cameras, microscopy systems, spectrographs | is related to: Andor: Zyla 5.5 sCMOS | SCR_023609 | 2026-07-25 12:10:30 | 11 | |||||||||||
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Bruker Daltonics Resource Report Resource Website 10+ mentions |
Bruker Daltonics (RRID:SCR_023608) | commercial organization | Bruker Daltonics is subsidary of Bruker Corporation American. Bruker is manufacturer of scientific instruments for molecular and materials research, as well as for industrial and applied analysis. | is related to: Bruker: timsTOF fleX with MALDI-2 | SCR_023608 | 2026-07-25 12:10:31 | 15 | ||||||||||||
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10x Genomics: Xenium Analyzer Resource Report Resource Website 1+ mentions |
10x Genomics: Xenium Analyzer (RRID:SCR_023910) | instrument resource | Xenium Analyzer offers subcellular profiling of 100s to 1,000s of RNA targets alongside multiplexed protein, in fresh, frozen or FFPE tissue. | 10x Genomics, subcellular profiling, RNA targets, multiplexed protein, fresh tissue, frozen tissue, FFPE tissue, |
works with: 10x Genomics Xenium Onboard Analysis works with: Xenium Ranger |
Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023910.pdf | SCR_023910 | Xenium Analyzer | 2026-07-25 12:10:34 | 2 | ||||||||
|
Forum Literature Propagation Resource Report Resource Website 1+ mentions |
Forum Literature Propagation (RRID:SCR_023874) | software resource | Method extending ’guilt by association’ principle to literature information by using Bayesian framework to suggest diseases associated with overlooked metabolites. | Metabolomic, Literature mining, Network-Analysis, Bayesian statistics, | Free, Available for download, Freely available | SCR_023874 | 2026-07-25 12:10:32 | 1 | |||||||||||
|
Akoya Biosciences Resource Report Resource Website 10+ mentions |
Akoya Biosciences (RRID:SCR_023774) | commercial organization | Spatial biology company offering solutions for high parameter tissue analysis from discovery through clinical and translational research, enabling development of more precise therapies for immuno-oncology and other drug development applications. | Spatial biology, high parameter tissue analysis, spatial phenotyping, | SCR_023774 | 2026-07-25 12:10:34 | 20 | ||||||||||||
|
Akoya Biosciences: PhenoCycler-Fusion Resource Report Resource Website |
Akoya Biosciences: PhenoCycler-Fusion (RRID:SCR_023773) | instrument resource | PhenoCycler-Fusion system is integrated platform combining automated, ultrahigh-plex cycling platform, Akoya PhenoCycler, and its high-speed imaging platform, PhenoImager (formerly Phenoptics), into end-to-end, integrated workflow. | USEDit, Akoya PhenoCycler, cycling platform, PhenoImager, imaging platform, integrated workflow, | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023773.pdf | SCR_023773 | Akoya PhenoCycler Fusion | 2026-07-25 12:10:33 | 0 | |||||||||
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Rainin: Pipet-Lite LTS Pipette L-1000XLS+ Resource Report Resource Website |
Rainin: Pipet-Lite LTS Pipette L-1000XLS+ (RRID:SCR_023894) | instrument resource | Pipet-Lite™ XLS+ manual single-channel pipette, 100-1000 μL, uses LTS™ LiteTouch™ tips. Accurate and precise, ergonomic, autoclavable liquid end, rugged and durable (L-1000XLS+) | Pipette, 100 ul to 1000 ul, instrument, equipment, Rainin | Restricted | SCR_023894 | Pipet-Lite LTS Pipette L-1000XLS+ | 2026-07-25 12:10:34 | 0 | ||||||||||
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Rainin: Pipet-Lite LTS Pipette L-200XLS+ Resource Report Resource Website |
Rainin: Pipet-Lite LTS Pipette L-200XLS+ (RRID:SCR_023892) | instrument resource | Pipet-Lite™ XLS+ manual single-channel pipette, 20-200 μL, uses LTS™ LiteTouch™ tips. Accurate and precise, ergonomic, autoclavable liquid end, rugged and durable (L-200XLS+) | Pipette, 20 ul to 200 ul, instrument, equipment, manual single channel pipette, Rainin | Restricted | SCR_023892 | , Pipet-Lite™ XLS+, Rainin Pipet-Lite™ XLS+ | 2026-07-25 12:10:34 | 0 | ||||||||||
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Nikon: N-SIM S Super Resolution Microscope Resource Report Resource Website |
Nikon: N-SIM S Super Resolution Microscope (RRID:SCR_023803) | instrument resource | Microscope enables super solution imaging of live cells at ten times the speed of conventional SIM. Powered by ECLIPSE Ti2-E Inverted Research Microscope, taking advantage of its advanced optics, stability and features. | Nikon, live cells imaging, imaging, USEDit | is listed by: USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023803.pdf | SCR_023803 | N-SIM S Super Resolution Microscope | 2026-07-25 12:10:34 | 0 | ||||||||
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Hitachi: 16-bit 3-CCD color camera HV-F203GV / HV-F203SCL Resource Report Resource Website |
Hitachi: 16-bit 3-CCD color camera HV-F203GV / HV-F203SCL (RRID:SCR_023888) | instrument resource | High resolution 1/1.8" 3 CCD Progressive Scan Color Camera with 1600 x 1200 pixel (UXGA) that is installed in the ZEISS Axioscan Z1 slide scanner. Integrated functions include electronic shutter from 1/30s to 1/100000s, Long term Integration up to 4s, AGC, external Trigger, Auto Shading, 6 Colour Masking, Frame-On-Demand Function, White Balance, AGC, Black Level Adjustment and Partial Scan Function. | Hitachi, CCD color camera, bright color, camera, instrument, equipment | is related to: Zeiss: Axio Scan.Z1 Slide Scanner | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023888.pdf | SCR_023888 | HV-F203GV / HV-F203SCL camera | 2026-07-25 12:10:33 | 0 | ||||||||
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Molecular Devices: SpectraMax iD3 multi-mode microplate reader Resource Report Resource Website 10+ mentions |
Molecular Devices: SpectraMax iD3 multi-mode microplate reader (RRID:SCR_023920) | instrument resource | Microplate reader to measure absorbance, fluorescence and luminescence. | Microplate reader, measure absorbance, measure fluorescence, measure luminescence, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023920 | SCR_023920 | Molecular Devices SpectraMax iD3 multi-mode microplate reader, SpectraMax® iD3 multi-mode microplate reader | 2026-07-25 12:10:34 | 13 | |||||||||
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caftools Resource Report Resource Website |
caftools (RRID:SCR_023982) | software resource | Software tools for manipulating Common Assembly Format files text format for describing sequence assemblies,that can be downloaded from the Sanger ftp site. | is listed by: Debian | Free, Available for download, Freely available | OMICS_24974 | https://sources.debian.org/src/caftools/ | SCR_023982 | 2026-07-25 12:10:35 | 0 | |||||||||
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Conquest DICOM Resource Report Resource Website |
Conquest DICOM (RRID:SCR_023993) | softwre application | Software for DICOM training and testing,Demonstration and research image archives,Image format conversion from scanner with DICOM network access,DICOM image viewing and slide making, DICOM image selection, (limited) editing, and splitting and merging of series, Advanced scriptable image modification, filtering, forwarding and conversion, DICOM caching and archive merging, DICOM web access for viewing and data management (scriptable),Connection to Lua IDE for all sorts of DICOM manipulation. | DICOM training and testing, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/conquest/ | SCR_023993 | conquest-common, conquest-dbase, conquest-postgres, conquest-dicom-server, conquest-sqlite, conquest-mysql | 2026-07-25 12:10:34 | 0 | ||||||||
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CHIME Resource Report Resource Website |
CHIME (RRID:SCR_023987) | softwre application | Software designed to assist hospitals and public health officials with understanding hospital capacity needs as they relate to the COVID pandemic. CHIME enables capacity planning by providing estimates of total daily and running totals of inpatient hospitalizations, ICU admissions, and patients requiring ventilation. | providing estimates, capacity planning, | is listed by: Debian | Free, Available for download, Freely available | https://sources.debian.org/src/chime/ | SCR_023987 | COVID-19 Hospital Impact Model for Epidemics, chime | 2026-07-25 12:10:35 | 0 |
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