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http://purl.bioontology.org/ontology/ICD10CM

Ontology of the International Classification of Diseases, 10th Edition, Clinical Modification, 2011_01

Proper citation: International Classification of Diseases Version 10 - Clinical Modification (RRID:SCR_010350) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ZEA

THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 23, 2014. Description not available.

Proper citation: Maize Gross Anatomy Ontology (RRID:SCR_010353) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MHC

Ontology that contains terms necessary for describing and categorizing concepts related to Major Histocompatibility Complex, in general, for a number of model species, and also for humans.

Proper citation: Major Histocompatibility Complex Ontology (RRID:SCR_010354) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MCCV

Structured controlled vocabulary for describing meta information of microbial calture collection maintained in biological research centers

Proper citation: Microbial Culture Collection Vocabulary (RRID:SCR_010361) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MIXS

Ontology providing an RDF representation of the MIxS (Minimal Information about any Sequence) family of checklists.

Proper citation: Minimal Information about any Sequence Ontology (RRID:SCR_010364) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NIFDYS

Ontology that contains the former BIRNLex-Disease, version 1.3.2. -- The BIRN Project lexicon provided entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. It was built using the organizational framework provided by the foundational Basic Formal Ontology (BFO). It used an abstract biomedical layer on top of that - OBO-UBO which was constructed as a proposal to the OBO Foundry. This was meant to support creating a sharable view of core biomedical objects such as biomaterial_entity, and organismal_entity that all biomedical ontologies are likely to need and want to use with the same intended meaning. The BIRNLex biomaterial entities have already been factored to separately maintained ontology - BIRNLexBiomaterialEntity.owl which this BIRNLex-Main.owl file imports. The Ontology of Biomedical Investigation (OBI) is also imported and forms the foundation for the formal description of all experiment-related artifacts. The BIRNLex will serve as the basis for construction of a formal ontology for the multiscale investigation of neurological disease.

Proper citation: NIF Dysfunction Ontlogy (RRID:SCR_010365) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MAMO

Ontology that is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.

Proper citation: Mathematical Modelling Ontology (RRID:SCR_000910) Copy   

•   Source: SciCrunch Registry

http://www.ncbcs.org/biositemaps/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 27,2023. A controlled terminology of resources, which is used to improve the sensitivity and specificity of web searches. It includes ''resource_type'', ''area of research'', and ''activity''. It is under development by a number of NIH-funded researchers who have a combined interest in classification of biomedical resources. The biositemaps site is no longer available but the biomedical resource ontology is still available via bioportal Biomedical Resource Ontology (BRO).

Proper citation: Biomedical Resource Ontology (RRID:SCR_004443) Copy   

•   Source: SciCrunch Registry

http://hymao.org

A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, sawflies and ants)

Proper citation: Hymenoptera Anatomy Ontology (RRID:SCR_003340) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NIFCELL

Ontology for cell types from NIFSTD

Proper citation: NIF Cell Ontology (RRID:SCR_003977) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/MS

A structured controlled vocabulary for the annotation of mass spectrometry experiments.

Proper citation: Mass Spectrometry Ontology (RRID:SCR_003579) Copy   

•   Source: SciCrunch Registry

http://code.google.com/p/opl-ontology/

A reference ontology that models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium.

Proper citation: Ontology for Parasite LifeCycle (RRID:SCR_003427) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/ontology-for-genetic-interval/

An ontology that formalized the genomic element by defining an upper class genetic interval using BFO as its framework. The definition of genetic interval is the spatial continuous physical entity which contains ordered genomic sets (DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic_Acid_Base_Residue) on a chromosome or RNA molecule which must have a liner primary sequence structure.

Proper citation: Ontology for Genetic Interval (RRID:SCR_003423) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OPE

Ontology that provides a reference for describing an exercise in terms of functional movements, engaged musculoskeletal system parts, related equipment or monitoring devices, intended health outcomes, as well as target ailments for which the exercise might be employed as a treatment or preventative measure.

Proper citation: Ontology of Physical Exercises (RRID:SCR_003836) Copy   

•   Source: SciCrunch Registry

https://bioportal.bioontology.org/ontologies/PCL/

Collection of ontology of provisional cells determined by experimental methods.

Proper citation: Provisional Cell Ontology (RRID:SCR_018332) Copy   

•   Source: SciCrunch Registry

http://fireball.drexelmed.edu/birnlex/OWLdocs/

THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 26, 2011. Lexicon that provides entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. These sources may include complex image databases, such as data from structural and functional magnetic resonance imaging (MRI) on human subjects involved in studies on Alzheimer''s disease or schizophrenia. The BIRNLex is a specialized vocabulary utilized by BIRN scientists in the context of their research, including common terms for neuroanatomy, molecular species, subject information, behavioral and cognitive processes, experimental practice and design, and the associated elements of primary data provenance required for large-scale data integration across disparate experimental studies.The BIRNLex offers well defined terms from several domains of importance to neuroimaging across scales.

Proper citation: BIRNLex (RRID:SCR_007326) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SPTO

Ontology for Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance.

Proper citation: Solanaceae Phenotype Ontology (RRID:SCR_007832) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CPRO

A uniform core set of data elements (whose formal semantics are captured in OWL) for use in a Computer-Based Patient Record (CPR)

Proper citation: Computer-Based Patient Record Ontology (RRID:SCR_007540) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SOY

Growth, trait and development ontology for soybean

Proper citation: Soy Ontology (RRID:SCR_007847) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/HCPCS

Ontology for the healthcare common procedure coding system.

Proper citation: Healthcare Common Procedure Coding System (RRID:SCR_007598) Copy   

•   Source: SciCrunch Registry