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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ANCESTRY Resource Report Resource Website 1+ mentions |
ANCESTRY (RRID:SCR_009121) | ANCESTRY | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that provides an easy to use web-based user interface to compute individual ancestry estimates using the Maximum Likelihood Estimation method. This website also allows registered users to manage genotype and marker/allele frequency files. Registration is optional. | gene, genetic, genomic, ruby on rails, fortran, web-based | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154224 | SCR_009121 | 2026-07-26 09:04:44 | 3 | ||||||||
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SNPEM Resource Report Resource Website 1+ mentions |
SNPEM (RRID:SCR_009086) | SNPEM | software application, software resource | Software application for EM algorithm estimations of SNP haplotypes (entry from Genetic Analysis Software) | gene, genetic, genomic, web-based | is listed by: Genetic Analysis Software | nlx_154098 | http://polymorphism.ucsd.edu/snpem/ | SCR_009086 | SNP Expectation Maximization | 2026-07-26 09:04:43 | 1 | |||||||
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PAP Resource Report Resource Website 1+ mentions |
PAP (RRID:SCR_009083) | PAP | software application, software resource | Software application that can (1) compute the likelihood of specified parameter values; (2) compute the probability of each genotype for pedigree members; (3) simulate phenotypes for output into files; (4) maximize the likelihood over specified parameters (with or without standard errors); (5) compute the standard errors of parameters for unknown estimates; (6) simulate phenotypes and estimate parameter values; (7) estimate expected lod score; (8) compute a grid of likelihood over one or two parameters. New additions to V5: assortative mating; TDT; additive multi-locus models (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, unix | is listed by: Genetic Analysis Software | nlx_154094 | SCR_009083 | Pedigree Analysis Package | 2026-07-26 09:04:43 | 7 | ||||||||
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FESTA Resource Report Resource Website 1+ mentions |
FESTA (RRID:SCR_009081) | FESTA | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154092 | SCR_009081 | Fragmented Exhaustive Seearch for TAgsnps | 2026-07-26 09:04:44 | 6 | ||||||||
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EHPLUS Resource Report Resource Website 1+ mentions |
EHPLUS (RRID:SCR_009159) | EHPLUS | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. | gene, genetic, genomic, c, unix, solaris, dec alpha, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154295 | SCR_009159 | EH, FASTEHPLUS | 2026-07-26 09:04:45 | 2 | |||||||
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CROSSFIND Resource Report Resource Website |
CROSSFIND (RRID:SCR_009157) | CROSSFIND | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for detecting and displaying well-characterized meiotic breakpoints in human family data. | gene, genetic, genomic, c, unix, sunos | is listed by: Genetic Analysis Software | DOI:10.1111/j.1469-1809.1996.tb01615.x | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154278 | SCR_009157 | BPT, BREAKPOINT | 2026-07-26 09:04:52 | 0 | ||||||
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CRIMAP-PVM Resource Report Resource Website |
CRIMAP-PVM (RRID:SCR_009156) | CRIMAP-PVM | software application, software resource | Software application that is a parallel version of CRIMAP (entry from Genetic Analysis Software) | gene, genetic, genomic, c, pvm | is listed by: Genetic Analysis Software | Source code available | nlx_154277 | http://compgen.rutgers.edu/multimap/crimappvm.html | SCR_009156 | CRIMAP with Parallel Virtual Machine | 2026-07-26 09:04:45 | 0 | ||||||
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CHROMOSEG Resource Report Resource Website 1+ mentions |
CHROMOSEG (RRID:SCR_009152) | CHROMOSEG | software application, software resource | A simulation program that simulates and plots (in real time) ancestral recombination graphs. This is currently primarily a teaching/educational tool. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154271 | SCR_009152 | 2026-07-26 09:04:44 | 1 | |||||||||
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MATLINK Resource Report Resource Website |
MATLINK (RRID:SCR_009148) | MATLINK | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A MATLAB utility for estimating genetic linkage in exotic line-cross mating designs. | gene, genetic, genomic, matlab | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154294 | SCR_009148 | 2026-07-26 09:04:52 | 0 | ||||||||
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CHECKHET Resource Report Resource Website |
CHECKHET (RRID:SCR_009147) | CHECKHET | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application to detect genetically abnormal subjects in a case-control sample based on genotypes at multiple marker loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154267 | SCR_009147 | 2026-07-26 09:04:45 | 0 | ||||||||
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CEPH2CRI Resource Report Resource Website |
CEPH2CRI (RRID:SCR_009143) | CEPH2CRI | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application to convert output from CEPH DBMS to CRIMAP format. | gene, genetic, genomic, pascal, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154262 | SCR_009143 | 2026-07-26 09:04:44 | 0 | ||||||||
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CC-QLS Resource Report Resource Website 1+ mentions |
CC-QLS (RRID:SCR_009140) | CC-QLS | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, unix | is listed by: Genetic Analysis Software | nlx_154259 | SCR_009140 | Case-Control Quasi-Likelihood Score test | 2026-07-26 09:04:44 | 1 | ||||||||
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CCRAVAT Resource Report Resource Website |
CCRAVAT (RRID:SCR_009141) | CCRAVAT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2026. Software application for enabling the analysis of rare variants in large-scale case control and quantitative trait association studies. CCRaVAT (Case-Control Rare Variant Analysis Tool) and QuTie (Quantitative Trait) are software packages that enable efficient large-scale analysis of rare variants across specific regions or genome-wide. These programs implement a rare variant super-locus or collapsing method that investigates the accumulation of rare variant alleles in either a case-control or quantitative trait study design. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154260 | SCR_009141 | Case-Control RAre Variant Analysis Tool QUTIE | 2026-07-26 09:04:45 | 0 | |||||||
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GSMA Resource Report Resource Website 1+ mentions |
GSMA (RRID:SCR_009214) | GSMA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 7,2025. Software application that is a rank-based meta-analysis method for analyzing results from genome-wide linkage searches. A software package is now available. The gsma software calculates the summed rank for any number of studies and bins, then obtains p-values for the Summed Rank and the Ordered Rank statistics, by simulation. Weighted and unweighted analyses are performed. A test data set is included. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, solaris, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154367 | http://mmg.umds.ac.uk/GSMA | SCR_009214 | Genome Search Meta Analysis | 2026-07-26 09:04:46 | 4 | ||||||
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GLUE Resource Report Resource Website 10+ mentions |
GLUE (RRID:SCR_009211) | GLUE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. A web interface to several commonly used statistical genetics programs, including Linkage, Genehunter, Merlin, Unphased, and Transmit. It simplifies their use through graphical selection of program options, automation of multiple analyses, and viewing of graphical output. GLUE is available to HGMP account holders; registration is free to all academic users., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, perl, any web browser, bio.tools |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154360, biotools:GLUE | https://bio.tools/GLUE | http://portal.litbio.org/Registered/Webapp/glue/ | SCR_009211 | Genetic Linkage User Environment | 2026-07-26 09:04:46 | 46 | |||||
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GHOST Resource Report Resource Website 50+ mentions |
GHOST (RRID:SCR_009209) | GHOST | software application, software resource | Software package for family-based genomewide association (GWA) analysis, with the ability to infer missing genotypes using the Elston-Stewart algorithm. When SNPs from an association panel are less complete (i.e., having more missing genotypes) than markers from a linkage panel, many of the missing genotypes can be determined. GHOST can handle large pedigrees -- when pedigrees are small, Merlin is also recommended for this analysis. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154357 | SCR_009209 | 2026-07-26 09:04:54 | 68 | |||||||||
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GENTOOLS Resource Report Resource Website 1+ mentions |
GENTOOLS (RRID:SCR_009205) | GENTOOLS | software application, software resource | Software application for analysis and manipulation of genetic linkage data of genetic linkage data, including conversions of pedigree files between CRI-MAP and LINKAGE format. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154352 | http://www.genlink.wustl.edu/software/index.html | SCR_009205 | 2026-07-26 09:04:46 | 6 | ||||||||
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GEST Resource Report Resource Website 50+ mentions |
GEST (RRID:SCR_009206) | GEST | software application, software resource | Software application (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154353 | SCR_009206 | Gene-Environment interaction and STability | 2026-07-26 09:04:54 | 91 | |||||||
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GENOPROOF Resource Report Resource Website 1+ mentions |
GENOPROOF (RRID:SCR_009204) | GENOPROOF | software application, software resource | Software package for the analysis of multiplex PCR kits within the scope of paternity testing, kinship cases and population studies. GenoProof offers: (1) probably the most extensive existing population database for all supported markers of more than 50 ethnic groups, (2) individually configurable quality assurance options, (3) complex concept of user rights in order to guarantee data security, (4) languages German and English (entry from Genetic Analysis Software) | gene, genetic, genomic, java, ms-windows, (95/98/2000/nt/xp) | is listed by: Genetic Analysis Software | nlx_154351 | SCR_009204 | 2026-07-26 09:04:46 | 2 | |||||||||
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GENEVAR Resource Report Resource Website 50+ mentions |
GENEVAR (RRID:SCR_009201) | GENEVAR | software application, software resource | A database and Java tool designed to integrate multiple datasets, and provides analysis and visualization of associations between sequence variation and gene expression in eQTL studies. Genevar allows researchers to investigate eQTL (expression quantitative trait loci) associations within a gene locus of interest in real time. The database and application can be installed on a standard computer in database mode and, in addition, on a server to share discoveries among affiliations or the broader community over the internet via web services protocols. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154342 | SCR_009201 | GENe Expression VARiation | 2026-07-26 09:04:46 | 88 |
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