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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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METAPC Resource Report Resource Website 1+ mentions |
METAPC (RRID:SCR_014916) | software resource | Software program to predict metabolic and degradation products of chemicals. METAPC has dictionaries on mammalian metabolism, aerobic microbial degredation, anerobic microbial degredation, and photo degredation. | metabolic, mammalian metabolism, aerobic microbial degredation, anerobic microbial degredation, photo degredation | Commercial | SCR_014916 | 2026-07-25 12:08:09 | 1 | |||||||||||
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bcl2fastq Resource Report Resource Website 1000+ mentions |
bcl2fastq (RRID:SCR_015058) | software processing resource | Conversion software developed by Illumina that both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis. | bcl file, illumina, sequencing, fastq, conversion software | Restricted | http://emea.support.illumina.com/downloads/bcl2fastq-conversion-software-v2-20.html | SCR_015058 | bcl2fastq2, bcl2fastq2 Conversion Software v2.20 | 2026-07-25 12:08:05 | 3756 | |||||||||
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Osteogenesis Imperfecta Foundation Resource Report Resource Website 1+ mentions |
Osteogenesis Imperfecta Foundation (RRID:SCR_015034) | OIF | institution | Foundation for improving the quality of life for people affected by OI through treatment and cure research, education, awareness, and mutual support. OIF lists personal resources for individuals affected by osteogenesis imperfecta as well as professional and clinical resources for researchers. | osteogenesis imperfecta, bone disease, brittle bone, patient support, cure research | Osteogenesis imperfecta | U.S. Combined Federal Campaign ; Medical Research Charities ; National Health Council ; NORD ; PAG ; Rare Clinical Diseases Research Network |
Public | grid.423291.f, ISNI: 0000 0000 9148 0660, Crossref funder ID: 100003227 | https://ror.org/05a6emh10 | SCR_015034 | Osteogenesis Imperfecta Foundation (OIF) | 2026-07-25 12:08:10 | 1 | |||||
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CDC Laboratory Quality Assurance and Standardization Programs Resource Report Resource Website 50+ mentions |
CDC Laboratory Quality Assurance and Standardization Programs (RRID:SCR_015000) | gold standard | Standardization program which helps assure the quality of laboratory test data and results so patients, healthcare providers, researchers, and public health officials can be confident that laboratory test results they receive are accurate. CDC services include reference materials, proficiency testing, training, guideline creation, and consultations. Quality assurance and standardization programs can be can be customized by and for users and laboratories. | standardization program, quality assurance, lab test data, accurate data | has parent organization: Centers for Disease Control and Prevention | Available to the research community | SCR_015000 | 2026-07-25 12:08:10 | 83 | ||||||||||
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BZ 9000 Fluorescence Microscope Resource Report Resource Website 10+ mentions |
BZ 9000 Fluorescence Microscope (RRID:SCR_015486) | Microscope system performs fluorescence, bright-field and phase-contrast imaging on various specimen holders. The system allows users to switch between four fluorescent channels, automatically adjusting the filter and exposure time while preserving the longevity of the specimen. | microscope, fluorescence microscope, fluorescence microscopy | Commercially available | https://www.photonics.com/Product.aspx?PRID=47416 | SCR_015486 | BZ-9000 Fluorescence Microscope | 2026-07-25 12:08:10 | 11 | ||||||||||
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Thermo Fisher: Applied Biosystems: 3730xl Capillary Genetic Sequencer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3730xl Capillary Genetic Sequencer (RRID:SCR_018059) | instrument resource | 96-capillary DNA analyzer that performs DNA fragment analysis applications such as microsatellites, AFLP, SNP analysis, mutation detection and traditional DNA sequencing. Has multiple automation features. Performs sequencing and fragment analysis applications including resequencing, microsatellite analysis, AFLP, LOH, SSCP, SNP screening and SNP validation. | ABRF, capillary sequencer, 96-capillary DNA analyzer, high throughput genetic analysis, DNA fragment analysis, microsatellites, AFLP, SNP analysis, mutation detection, DNA sequencing, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018059.pdf | Model_Number_3730xl | SCR_018059 | Applied Biosystems 3730xl Capillary Sequencer | 2026-07-25 12:08:39 | 2 | ||||||||
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Agilent: Femto Pulse System Resource Report Resource Website 1+ mentions |
Agilent: Femto Pulse System (RRID:SCR_018058) | instrument resource | Femto Pulse System separates large molecular weight DNA fragments and detects nucleic acids into femtogram range.Fragment analyzer that provides pulsed field power supply which allows large molecular weight DNA fragments to be separated and nucleic acids detected into femtogram range. Ability to separate high molecular weight DNA up to 165 kb and detect nucleic acids down to 50 fg per uL input concentration makes system ideal for long-read NGS QC, gDNA, small RNA, or cfDNA analysis from low concentration samples. | ABRF, Agilent, Femto Pulse System, Instrument Equipment, USEDit, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018058.pdf | Model_Number_Femto Pulse, SCR_019498 | https://www.agilent.com/cs/library/usermanuals/public/quick-guide-fp-1002-gdna-165-kb-kit-SD-AT000141.pdf | SCR_018058 | AATI FemtoPulse, Advanced Analytical Technologies, Inc. FEMTO Pulse Fragment Analyzer, AATI FEMTO Pulse Fragment Analyzer | 2026-07-25 12:08:44 | 3 | |||||||
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Thermo Fisher: Applied Biosystems: 3730 Genetic Analyzer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3730 Genetic Analyzer (RRID:SCR_018052) | instrument resource | Medium to high throughput genetic analyzer that performs DNA fragment analysis applications such as microsatellites, AFLP, SNP analysis, mutation detection and traditional DNA sequencing. Upgradeable to 96 capillaries. | ABRF, genetic analyzer, 96 capillary electrophoresis, DNA fragment analysis, microsatellites, AFLP, SNP analysis, mutation detection, DNA sequencing, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018052.pdf | Model_Number_3730 | https://assets.thermofisher.com/TFS-Assets/LSG/manuals/4478016A.pdf | SCR_018052 | 3730 DNA Analyzer | 2026-07-25 12:08:44 | 3 | |||||||
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Eppendorf: 5418 R Centrifuge Resource Report Resource Website |
Eppendorf: 5418 R Centrifuge (RRID:SCR_018050) | instrument resource | Refridgerated centrifuge with 18 place capacity rotor that accomdates low to medium capacity in 1.5 or 2.0 mL tubes and Microtainer. Speed allows for standard molecular biology applications. Compact size and quiet operation. | ABRF, refrigerated centrifuge, Eppendorf, benchtop centrifuge, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018050.pdf | Model_Number_5418_R | https://www.eppendorf.com/product-media/doc/en/173997/Eppendorf_Centrifugation_Operating-manual_Centrifuge-5418-R.pdf | SCR_018050 | Eppendorf 5418 Centrifuge (2) | 2026-07-25 12:08:39 | 0 | |||||||
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Bio-Rad: CFX384 Real-Time Detection System Resource Report Resource Website 10+ mentions |
Bio-Rad: CFX384 Real-Time Detection System (RRID:SCR_018057) | instrument resource | Real Time PCR instrument in 384-well format that performs high-throughput data acquisition. System utilizes temperature control and sensitive, 4-color detection optics to deliver qPCR results for singleplex or multiplex reactions. Quickly set up runs and monitor amplification traces in real time on integrated LCD touch screen, or use CFX Maestro Software to design experiment and analyze results from connected computer. | ABRF, Real-Time Instrument, RT PCR, equipment, Bio Rad | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018057.pdf | Model_Number_CFX384 | https://www.bio-rad.com/webroot/web/pdf/lsr/literature/Bulletin_5639C.pdf | SCR_018057 | Bio-Rad CFX384 Real-Time System | 2026-07-25 12:08:42 | 27 | |||||||
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BD Biosciences: FACSCanto Flow Cytometer Resource Report Resource Website 10+ mentions |
BD Biosciences: FACSCanto Flow Cytometer (RRID:SCR_018055) | instrument resource | Flow cytometry system that performs reliable performance, accuracy, and ease-of-use for clinical diagnostic services. System has 10 color capability, optical enhancements, and 4-3-3 configuration deliver high sensitivity and resolution for accurate results. | ABRF, Flow Cytometer, flow cytometry, multicolor analysis, BD FACSCanto, instrument, equipment | is listed by: USEDit | Model_Number_Canto | https://www.bdbiosciences.com/content/dam/bdb/marketing-documents/facscanto_techspecs.pdf | SCR_018055 | Canto-blue and red lasers | 2026-07-25 12:08:44 | 17 | ||||||||
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Bruker: 9.4T Biospec Biospec Magnetic Resonance Imaging Resource Report Resource Website 1+ mentions |
Bruker: 9.4T Biospec Biospec Magnetic Resonance Imaging (RRID:SCR_018054) | instrument resource | MRI system that performs preclinical and molecular MR imaging. MRI CryoProbe technology combined with ultra high field USR magnets deliver high spatial resolution in-vivo. Any small animal MR imaging application in life science, biomedical and preclinical research can be conducted. | ABRF, Magnetic Resonance Imaging, small animal imaging, BioSpec, Bruker, preclinical veterinary imaging, molecular MRI, instrument, equipment | is listed by: USEDit | Model_Number_Biospec | SCR_018054 | 9.4T Bruker Biospec MRI | 2026-07-25 12:08:41 | 6 | |||||||||
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BGI: BGISEQ-500 Resource Report Resource Website 10+ mentions |
BGI: BGISEQ-500 (RRID:SCR_017979) | instrument resource | Desktop sequencer developed by BGI. Using DNA nanoball and combinational probe anchor synthesis developed from Complete Genomics sequencing technologies, it generates short reads at large scale. BGI/MGI Sequencer. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | is used by: BGI: DNBSeq PE150 BGISEQ-500 sequencing system | DOI:10.1093/gigascience/giy144 DOI:10.1101/786962 |
Restricted | https://www.bgi.com/global/company/careers/bgi-launches-its-desktop-sequencer-bgiseq-500/ | SCR_017979 | 2026-07-25 12:08:39 | 25 | ||||||||
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MGI: DNBSEQ-T7 Resource Report Resource Website 10+ mentions |
MGI: DNBSEQ-T7 (RRID:SCR_017981) | instrument resource | Sequencer can generate 1-6Tb of high quality data per day, for wide range of applications including Whole Genome Sequencing, Deep Exome Sequencing, Epigenome Sequencing, Transcriptome Sequencing, and targeted panel projects. Powered by DNBSEQTM Technology, DNBSEQ-T7 makes sequencing more efficient and productive with advances in biochemical, fluidics, and optical systems. Detection and characterization of copy number variants based on whole-genome sequencing by MGI platforms. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | DOI:10.1101/786962 | Restricted | https://en.mgi-tech.com//Uploads/Temp/file/20230619/648fc032e4af9.pdf | SCR_017981 | 2026-07-25 12:08:37 | 23 | |||||||||
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PacBio: RS II Sequencing System Resource Report Resource Website 1+ mentions |
PacBio: RS II Sequencing System (RRID:SCR_017988) | instrument resource | Sequencer by Pacific Biosciences. System allows scientists to generate finished genome assemblies, reveal and understand epigenomes, and characterize genomic variation. It achieves longest read lengths and highest consensus accuracy. Finishes microbial genomes and improves assembly of larger organisms with multi-kilobase reads and unbiased coverage regardless of GC content. No amplification is required. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | Restricted | https://www.mscience.com.au/upload/pages/pacbio/pacbio_rs_ii_brochure.pdf | SCR_017988 | RS II System, RS II Sequencing System | 2026-07-25 12:08:40 | 7 | |||||||||
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Oxford: Nanopore Technologies: PromethION Resource Report Resource Website 50+ mentions |
Oxford: Nanopore Technologies: PromethION (RRID:SCR_017987) | instrument resource | System offers real-time, long-read, direct DNA and RNA sequencing by Oxford Nanopore Technologies. System suitable for large scale projects such as population-scale sequencing or plant genomics, or for large scale service offerings. PromethION 24 and PromethION 48 systems offer ability to run 24 and 48 flow cells respectively. System allows on demand sequencing, using any flow cell at any time. Users can start and stop running individual experiments as required, or deploy multiple flow cells onto single experiments for greater speed or throughput. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment |
is related to: NanoporeTech: GridION Mk1 is related to: Oxford: Nanopore Technologies MinION |
Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_017987.pdf | https://community.nanoporetech.com/requirements_documents/promethion-spec.pdf | SCR_017987 | PromethION 24, PromethION 48 | 2026-07-25 12:08:37 | 83 | |||||||
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NanoporeTech: GridION Mk1 Resource Report Resource Website 1+ mentions |
NanoporeTech: GridION Mk1 (RRID:SCR_017986) | instrument resource | Benchtop sequencing and analysis device designed to run and analyse up to five individually addressable MinION or Flongle Flow Cells by Oxford Nanopore Technologies. Good for labs with multiple projects that need advantages of nanopore sequencing: simple library preparation, real-time analysis and new biological insights from long reads. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment |
is related to: Oxford: Nanopore Technologies MinION is related to: Oxford: Nanopore Technologies: PromethION |
Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_017986.pdf | https://community.nanoporetech.com/requirements_documents/gridion-mk1-spec.pdf | SCR_017986 | 2026-07-25 12:08:42 | 6 | ||||||||
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MGI: DNBSEQ-G400 Resource Report Resource Website 10+ mentions |
MGI: DNBSEQ-G400 (RRID:SCR_017980) | Restricted | instrument resource | Sequencer developed by MGI Tech Co. Ltd. Next generation sequencing platform. Its sequencing principle relies on DNB and cPAS technologies also used in previous version of BGISEQ-500 device, but reagents for MGISEQ-2000 are refined and platform utilizes updated software. Built with new chip system that can flexibly support variety of different sequencing models. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | DOI:10.1101/577080 | https://en.mgi-tech.com//Uploads/Temp/file/20220616/62aacd2432d7b.pdf | SCR_017980 | MGISEQ-2000 | 2026-07-25 12:08:42 | 13 | ||||||||
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Leica: EG1160 Embedding Station Resource Report Resource Website |
Leica: EG1160 Embedding Station (RRID:SCR_018033) | instrument resource | Paraffin embedding station that provides constant, reproducible paraffin flow at ten different flow rate settings. All instrument functions, including automatic starting time, are individually programmable at press of button. Compact dimensions, ease of operation, and high standards of convenience. Separately-heated paraffin dispensing system with integrated filter provides constant, reproducible paraffin flow at ten different flow rate settings. | ABRF, paraffin embedding station, Leica, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018033.pdf | Model_Number_1160 | https://bme.columbia.edu/files/seasdepts/biomedical-engineering/pdf-files/Leica_EG1160_Manual.pdf | SCR_018033 | EG 1160 paraffin embedding station | 2026-07-25 12:08:44 | 0 | |||||||
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Molecular Devices: Molecular Dynamics Storm 860 Molecular Imager Resource Report Resource Website |
Molecular Devices: Molecular Dynamics Storm 860 Molecular Imager (RRID:SCR_018032) | instrument resource | Multifunction phosphoimager fluorimager laser scanner that collects fluorescent or storage phosphor images from gels, membranes and phosphor screens. It is equipped with blue (450 nm) and red (635 nm) lasers, can scan at resolutions down to 50 microns. It is able to quantify radioactive gels for commonly used isotopes such as 32P, 33P, 125I, 35S, and 14C. There are three detection modes: phosphor screen mode, red/blue fluorescence, chemifluorescence. | ABRF, molecular imager, GE HealthCare, gel, blot, analysis, laser scanner, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018032.pdf | Model_Number_Storm 860 Imager | https://btiscience.org/wp-content/uploads/2014/04/Storm_User_Manual.pdf | https://www.mbl.edu/jbpc/files/2014/05/Storm_Info.pdf | SCR_018032 | Storm 860 Molecular Imager, Storm Gel and Blot Imaging System | 2026-07-25 12:08:41 | 0 |
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