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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
Private organization that offers resources and serves as a community for those recovering from addiction and to help patients find the highest quality care for a successful recovery.
Proper citation: AddictionResources (RRID:SCR_015048) Copy
https://www.agilent.com/cs/library/datasheets/Public/5991-2541EN.pdf
Hardware system which automates RNA, DNA, and protein sample QC, including sample loading, separation, and imaging.
Proper citation: Agilent: 2200 TapeStation Instrument (RRID:SCR_014994) Copy
This resource is not available. Documented on October 6, 2020.Software for the analysis of mass spectrometry data. MassHunter also works with software-specific packages to do more specialized analysis tasks.
Proper citation: Agilent Masshunter Quantitative Analysis software (RRID:SCR_015040) Copy
Image acquisition and analysis software suite for Hamamatsu imaging devices. Hamamatsu Photonics imaging system for microscopy.
Proper citation: HCImage (RRID:SCR_015041) Copy
http://www2.chemie.uni-erlangen.de/software/cactvs/
Computational chemistry related-software used for the computation management, analysis and visualisation of chemical information of any defined type. This software uses a worldwide network of databases with property descriptions, computational modules, data analysis tools, visualization servers, data type handlers and I/O modules to increase the software�s capacity extensibility.
Proper citation: CACTVS System (RRID:SCR_014919) Copy
Regional commission of the United Nations with the purpose of contributing to the economic development of Latin America, coordinating actions directed towards this end, reinforcing economic ties among countries and with other nations, and promoting social development.
Proper citation: Economic Commission for Latin America and the Caribbean (RRID:SCR_014998) Copy
http://www.multicase.com/meta-pc
Software program to predict metabolic and degradation products of chemicals. METAPC has dictionaries on mammalian metabolism, aerobic microbial degredation, anerobic microbial degredation, and photo degredation.
Proper citation: METAPC (RRID:SCR_014916) Copy
https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html
Conversion software developed by Illumina that both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.
Proper citation: bcl2fastq (RRID:SCR_015058) Copy
http://www.mybiosoftware.com/seaview-4-2-12-sequence-alignment-phylogenetic-tree-building.html
Graphical user interface for multiple sequence alignment and molecular phylogeny. SeaView also generates phylogenetic trees.
Proper citation: SeaView (RRID:SCR_015059) Copy
Text mining tool for publishers and researchers. UNSILO modules possess functions such as searching, recommending articles with similar topics, mapping article relationships, and providing insights into article trends and metrics.
Proper citation: UNSILO (RRID:SCR_015019) Copy
Data analysis tool that utilizes the Comparative CT (ddCT) method to rapidly and accurately quantitate relative gene expression across a large number of genes and samples. Raw input from plates or arrays can be analyzed according to user-determined settings.
Proper citation: DataAssist (RRID:SCR_014969) Copy
Modular, web-based bioinformatics system for research studies and clinical trials data collection. Tools include a data dictionary, data repository, meta study, global unique identifiers for studies, protocol management and data capture, and query and exportation of data.
Proper citation: NIH Brics (RRID:SCR_015028) Copy
http://iiif.io/#plug-’n’-play-software
Set of shared application programming interface specifications for interoperable functionality in digital image repositories. It utilizes JSON-LD, linked data, and standard W3C web protocols to parse and share digital image data, migrate across technology systems, and provide enhanced image access.
Proper citation: International Image Interoperability Framework (RRID:SCR_015029) Copy
https://sourceforge.net/projects/soapdenovo2/files/GapCloser/
Module of SOAPdenovo2 commonly used independently to close gaps in genome assemblies.
Proper citation: GapCloser (RRID:SCR_015026) Copy
http://www.nitrc.org/projects/gscca_2013/
Group Sparse Canonical Correlation Analysis is a method designed to study the mutual relationship between two different types of data.
Proper citation: Group Sparse Canonical Correlation Analysis (RRID:SCR_014977) Copy
Website resource for researchers to order and send Drosophilia specimens to each other. This community-driven supplier also works with the FlyBase Drosophilia database to search for synonyms for fly species.
Proper citation: Drososhare (RRID:SCR_014976) Copy
http://www.synergy.com/wordpress_650164087/
Data analysis, graphing, and management application that allows users to import, manipulate, analyze data, and create customized plots. Plots include x-y probability, histogram, box, percentile, horizontal bar, stack bar, column, stack column, polar, and pie. Binned data can be exported to a histogram, step plot, or spike plot. KaleidaGraph works with Windows and Macintosh systems., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: KaleidaGraph (RRID:SCR_014980) Copy
Group whose goal is to improve health outcomes for individuals with X-linked adrenoleukodystrophy by raising disease awareness, improving education, providing support for and information to patients, and performing clinical ALD research.
Proper citation: ALD Connect (RRID:SCR_015035) Copy
http://research.ics.aalto.fi/ica/icasso/
Software implementing a method for assessing both the algorithmic and statistical reliability of estimated independent components developed by Himburg et al in their 2004 paper. The method is based on running the ICA algorithm many times with slightly different conditions and visualizing the clustering structure of the obtained components in the signal space. In experiments with magnetoencephalographic (MEG) and functional magnetic resonance imaging (fMRI) data, the method was able to show that expected components are reliable; furthermore, it pointed out components whose interpretation was not obvious but whose reliability should incite the experimenter to investigate the underlying technical or physical phenomena.
Proper citation: ICASSO (RRID:SCR_014981) Copy
Foundation for improving the quality of life for people affected by OI through treatment and cure research, education, awareness, and mutual support. OIF lists personal resources for individuals affected by osteogenesis imperfecta as well as professional and clinical resources for researchers.
Proper citation: Osteogenesis Imperfecta Foundation (RRID:SCR_015034) Copy
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