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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GMSH Resource Report Resource Website 10+ mentions |
GMSH (RRID:SCR_021226) | software resource | Open source software tool as 3D finite element grid generator with build in CAD engine and post processor. Provides meshing tool with parametric input and advanced visualization capabilities. Built around geometry, mesh, solver and post processing modules.Specification of any input to these modules is done either interactively using graphical user interface, in ASCII text files using Gmsh own scripting language (.geo files), or using C plus plus, C, Python or Julia Application Programming Interface. | 3D finite element grid generator, CAD engine build in, post processor, meshing tool | Free, Available for download, Freely available | https://gitlab.onelab.info/gmsh/gmsh | SCR_021226 | 2026-08-01 12:07:06 | 16 | ||||||||||
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BioSpherix: A-Chamber Resource Report Resource Website 1+ mentions |
BioSpherix: A-Chamber (RRID:SCR_021177) | A-Chamber, A-Chamber Animal Cage Enclosure | instrument resource | Animal Cage Enclosures for use in in vivo models that require control of experimental gases such as O2, CO2, NO, or CO. May be used together with gas controllers from BioSpherix. Chamber is outfitted with adjustable ventilation holes which permit ventilation of animal vapors and gases while simultaneously ensuring stable control of experimental conditions within. Available in three standard sizes. | Animal Cage Enclosures, control of experimental gases, chamber adjustable ventilation holes, BioSpherix Ltd. | Commercially Available | SCR_021177 | 2026-08-01 12:07:07 | 2 | ||||||||||
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ALLMAPS Resource Report Resource Website 1+ mentions |
ALLMAPS (RRID:SCR_021171) | software resource | Software tool for computing scaffold ordering that maximizes colinearity to collection of maps, including genetic, physical or comparative maps into final chromosome build.Robust scaffold ordering based on multiple maps. | Scaffold ordering, maps collection, genetic maps, physical maps, comparative maps, chromosome build | Fujian 100 Talent Plan award ; Gordon and Betty Moore Foundation ; National Science Foundation DBI 0735191; National Science Foundation DBI 1265383 |
PMID:25583564 | Free, Available for download, Freely available | SCR_021171 | 2026-08-01 12:07:05 | 4 | |||||||||
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BioSpherix: Biological Safety Hood Resource Report Resource Website |
BioSpherix: Biological Safety Hood (RRID:SCR_021206) | instrument resource | Hood holds any animal lab chambers while continuously sweeping all experiment related off gases away.Used to capture and exhaust gases or vapors which escape from animal chamber and directs them to safe location.Helps to control animal odor in the lab. Available in standard and customized dimensions. | Safety hood, animal chambers, capture gases, exhaust gases, BioSpherix, instrument, equipment, USEDit | is listed by: USEDit | Commercially Available | SCR_021206 | Safety Hood, Safety Hood for Animal Chambers | 2026-08-01 12:07:14 | 0 | |||||||||
|
Noldus: CatWalk XT Resource Report Resource Website 10+ mentions |
Noldus: CatWalk XT (RRID:SCR_021262) | instrument resource | Gait analysis system for quantitative assessment of footfalls and locomotion in rats and mice. System includes corridor that directs free movement in straight line, hardened glass walkway that enables CatWalk XT Illuminated Footprints technology,high speed color camera for spatial and temporal resolution, CatWalk XT software for recording and automated analysis of locomotor ability of rodents. | CatWalk XT, gait analyses, gait analysis system, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | SCR_021262 | CatWalk XT, Noldus | 2026-08-01 12:07:07 | 12 | |||||||||
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Leica: Aperio AT2 scanner Resource Report Resource Website 10+ mentions |
Leica: Aperio AT2 scanner (RRID:SCR_021256) | instrument resource | Digital whole slide scanner.400 slide capacity brightfield scanner. High throughput with small footprint. 2x3 slide option available.Aperio AT2 runs on Microsoft Windows 10 operating system. | Digital whole slide scanner, scanner, instrument, equipment, USEDit | is listed by: USEDit | Model_Number_Aperio_AT2 | SCR_021256 | Aperio AT2 | 2026-08-01 12:07:08 | 20 | |||||||||
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MatNWB Resource Report Resource Website |
MatNWB (RRID:SCR_021156) | software resource | Software Matlab interface for reading and writing Neurodata Without Borders (NWB) 2.0 files. | reading NWB files, writing NWB files, Neurodata Without Borders, NWB 2.0 files |
is listed by: Neurodata Without Borders is related to: HDMF Common Schema |
Free, Available for download, Freely available | https://www.nwb.org/tools/, https://github.com/NeurodataWithoutBorders/matnwb | SCR_021156 | matnwb | 2026-08-01 12:07:04 | 0 | ||||||||
|
TailTimer Resource Report Resource Website 1+ mentions |
TailTimer (RRID:SCR_021277) | instrument resource | Device for automating tail immersion assay. Used for measuring acute thermal pain in rodents. Software recognizes several specific RFID keys as user interface commands, which allows TailTimer to be operated via RFID fobs. | Automating tail immersion assay, measuring acute thermal pain, pain in rodents, thermal pain | SCR_021277 | 2026-08-01 12:07:07 | 1 | ||||||||||||
|
NWBwidgets Resource Report Resource Website 1+ mentions |
NWBwidgets (RRID:SCR_021154) | software resource | of widgets for visualization NWB data in Jupyter notebook. Widgets allow you to navigate through hierarchical structure of NWB file and visualize specific data elements. Designed to work with NWB 2.0 files and to be easy to extend. | visualization NWB data, Jupyter notebook, widgets library, NWB file hierarchical structure, | is listed by: Neurodata Without Borders | Free, Available for download, Freely available | https://www.nwb.org/tools/ | SCR_021154 | 2026-08-01 12:07:06 | 2 | |||||||||
|
Bash Resource Report Resource Website 10+ mentions |
Bash (RRID:SCR_021268) | software resource | GNU Project shell. Sh-compatible shell that incorporates useful features from Korn shell (ksh) and the C shell (csh). Improvements offered by Bash include command-line editing, unlimited size command history,job control,shell functions and aliases,indexed arrays of unlimited size,integer arithmetic in any base from two to sixty four. | GNU Project shell, command-line editing, unlimited size command history, job control, shell functions and aliases, indexed arrays of unlimited size, integer arithmetic | Free, Freely available | SCR_021268 | Bourne Again SHell | 2026-08-01 12:07:15 | 12 | ||||||||||
|
Nikon: Eclipse E200 microscope Resource Report Resource Website 1+ mentions |
Nikon: Eclipse E200 microscope (RRID:SCR_021243) | instrument resource | Educational microscope. Designed as simple system that reduces fatigue from use over long periods. With structure and anti mold design, offers high quality and accuracy that can be retained for years even in hot and humid environments. | Educational microscope, anti mold design microscope, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | Model_Number_Eclipse_E200 | SCR_021243 | Eclipse E200, Eclipse E200 microscope | 2026-08-01 12:07:08 | 3 | ||||||||
|
Nikon: ECLIPSE Ti inverted microscope system Resource Report Resource Website 10+ mentions |
Nikon: ECLIPSE Ti inverted microscope system (RRID:SCR_021242) | instrument resource | ECLIPSE Ti Series of inverted microscopes combined with Nikon NIS-Elements imaging acquisition and analysis software, enables to generate data faster, more easily, and more accurately than ever before.Product Discontinued. Replaced by ECLIPSE Ti2 Series. | ECLIPSE Ti Series, inverted microscopes, Nikon NIS-Elements software, instrument, equipment, USEDit | is related to: Nikon: ECLIPSE Ti2 inverted microscope | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021242 | Model_Number_Ti | SCR_021242 | Nikon ECLIPSE Ti inverted microscope | 2026-08-01 12:07:15 | 31 | ||||||||
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Zeiss: Lattice Lightsheet 7 Resource Report Resource Website |
Zeiss: Lattice Lightsheet 7 (RRID:SCR_021237) | instrument resource | System for long term volumetric imaging of living cells. Makes light sheet fluorescence microscopy available for live cell imaging at subcellular resolution. Automated system for volumetric imaging of subcellular structures and dynamics over hours and days with protection from photo damage. | Instrument, equipment, USEDit, Lattice Light Sheet Microscopy, Gaussian light sheet microscopy, volumetric imaging of living cells, live cell imaging | is listed by: USEDit | Restricted | SCR_021237 | ZEISS Lattice Lightsheet 7 imaging system | 2026-08-01 12:07:06 | 0 | |||||||||
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Roche: Ventana DISCOVERY Ultra Resource Report Resource Website 10+ mentions |
Roche: Ventana DISCOVERY Ultra (RRID:SCR_021254) | instrument resource | Immunohistochemistry processor that can be used for immunohistochemistry and in situ hybridization slide preparation and processing. With 30 individual slide drawers, DISCOVERY ULTRA system enables to run both manual and fully automated experiments simultaneously with nosynchronization errors. Provides ability to fully automate broad range of IHC and ISH assays, including FISH, gene and protein IHC/ISH, mRNA ISH and multiplex assays with any combination of IHC and ISH. | Immunohistochemistry processor, slide preparation, slide processing, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | SCR_021254 | DISCOVERY ULTRA, Ventana DISCOVERY Ultra IHC/ISH research platform, VENTANA DISCOVERY ULTRA AUTOMATED SLIDE PREPARATION SYSTEM | 2026-08-01 12:07:15 | 14 | |||||||||
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Social LEAP Resource Report Resource Website 1+ mentions |
Social LEAP (RRID:SCR_021382) | SLEAP | software resource | Method for pose estimation that uses deep neural networks.Open source software tool as deep learning based framework for estimating positions of animal body parts.Supports multi animal pose estimation and tracking, and includes advanced labeling or training.SLEAP is next generation of LEAP and allows for tracking multiple animals. | Estimating positions, animal body parts, multi animal pose estimation, multi animal pose tracking, Princeton University, OpenBehavior |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project has parent organization: Princeton University; New Jersey; USA |
NSF GRFP ; DGE 1148900;Princeton Porter Ogden Jacobus Fellowship;NIMH R00 MH109674;NIGMS DP2 GM137424;NSF ; DEB 1754476;R01 NS104899;NSF ; PHY 1734030; |
DOI:10.1101/2020.08.31.276246 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/sleap/ | SCR_021382 | Social LEAP Estimates Animal Pose | 2026-08-01 12:07:17 | 6 | |||||
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IQVIA Resource Report Resource Website 10+ mentions |
IQVIA (RRID:SCR_021377) | commercial organization | IQVIA, formerly Quintiles and IMS Health, Inc., is an American multinational company serving the combined industries of health information technology and clinical research. | American company, health information technology, clinical research | is related to: Quintiles | SCR_021377 | 2026-08-01 12:07:08 | 35 | |||||||||||
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SHapley Additive ExPlanations Resource Report Resource Website 50+ mentions |
SHapley Additive ExPlanations (RRID:SCR_021362) | SHAP | software resource | Software tool as unified framework for interpreting predictions of machine learning models. Used to explain output of any machine learning model. Connects optimal credit allocation with local explanations using classic Shapley values from game theory and their related extensions. | Interpretable machine learning, interpreting predictions, machine learning models | Free, Available for download, Freely available | SCR_021362 | 2026-08-01 12:07:16 | 84 | ||||||||||
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Protara Therapeutics Resource Report Resource Website |
Protara Therapeutics (RRID:SCR_021376) | commercial organization | Clinical stage company identifying and advancing transformative therapies for people with rare and specialty diseases. Former name was ArTara Therapeutics. | Identifying and advancing transformative therapies, people with rare and specialty diseases | is related to: Proteon Therapeutics | SCR_021376 | ArTara Therapeutics | 2026-08-01 12:07:16 | 0 | ||||||||||
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Pulse Pal Resource Report Resource Website |
Pulse Pal (RRID:SCR_021611) | software resource | Software tool as part of Pulse Pal system which allows users to create and trigger software defined trains of voltage pulses with high temporal precision. | voltage pulses, pulse train generator, OpenBehavior |
is listed by: OpenBehavior is related to: Pulse Pal project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pulse-pal/ | SCR_021611 | 2026-08-01 12:07:13 | 0 | |||||||||
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SpikeGadgets Resource Report Resource Website 1+ mentions |
SpikeGadgets (RRID:SCR_021623) | commercial organization | Company to design and sell powerful neuroscience hardware that interfaces with open source software platform supported by large community of scientists and developers. Support efforts of open source community in commercially sustainable way. | Open Behavior | is listed by: OpenBehavior | SCR_021623 | SpikeGadgets | 2026-08-01 12:07:21 | 1 |
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