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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
http://www.ncbi.nlm.nih.gov/genome/viruses/
A database which provides viral and viroid genome sequence data and resource tools. Al viral genomes are downloadable and a complete RefSeq release of viral and viroid genome sequences are available.
Proper citation: NCBI Viral Genomes (RRID:SCR_013789) Copy
The NeuroML database is a curated relational database that provides for the storage and retrieval of computational neuroscience models expressed in NeuroML, which is an extensible XML-based language for describing complex mathematical models of neurons and neuronal networks. NeuroML models are unique in their modular and multi-scale structure, where subcomponents of models can correspond to neuroscience models. In particular, the NeuroML database allows for efficient searches over the components of models and metadata that are associated with a hierarchical NeuroML model description.
Proper citation: NeuroML Database (RRID:SCR_013705) Copy
http://www.ncbi.nlm.nih.gov/clone/
A database which integrates information about genomic clones and libraries, including sequence data, map positions and distributor information. A clone's standardized name in Clone DB is comprised of its microtiter plate address with plate number row and column, prefixed by the standard library abbreviation, to provide a unique clone name. Libraries with records may be accessed via the genomic or cell-based library browsers.
Proper citation: Clone DB (RRID:SCR_013791) Copy
A biomaterial supply and access service resource which provides a shared resource for coordinated tissue processing and biorepository services. Services include patient identification and informed consent, specimen collection, processing and banking, and annotation of banked specimens and specimen distribution. They provide biospecimen inventory management, services, and equipment. It is a shared resource of Duke University.
Proper citation: Biospecimen Repository and Processing Core (RRID:SCR_013792) Copy
A database which houses human subjects clinical trial data. NDCT currently contains data on 13,409 subjects and has access to data on 100,500 subjects from the NIMH Data Archive. Users can also sign up for news updates and watch video tutorials.
Proper citation: National Database for Clinical Trials related to Mental Illness (RRID:SCR_013795) Copy
https://drive.google.com/file/d/1hBdRU27fsVkioRZb_IY_8BGPwIi_2ipq/view?usp=drivesdk
Automated, high throughput microscale bioreactor system that replicates laboratory scale bioreactor performance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: Thermo Fisher: Sartorius: Ambr 15 Cell Culture Generation 2 (RRID:SCR_013797) Copy
A software application which contains a collection of biomedical resources and assist in the management resources. Resources consist of clinical trials, publications, abstracts, patents, news and events. Users can search, save, and make notes on publications.
Proper citation: CaptoMe (RRID:SCR_013757) Copy
A web application which provides public access to scientific literature through text and data mining.
Proper citation: ContentMine (RRID:SCR_013760) Copy
A web application tool which visualizes papers collected in arXiv. Users can search for papers and create an interactive graph to organize their resources. The graph shows the relationships between papers, the dates they were published, and other relevant information. Papers can be tagged and graphs can be shared with colleagues.
Proper citation: Paperscape (RRID:SCR_013768) Copy
http://research.mssm.edu/cnic/tools-viascode.html
The source code for VIAS software Version 2.4. The code is written in the C programming language and uses Win32 for the graphical user interface.
Proper citation: Volume Integration and Alignment System Source Code (RRID:SCR_013801) Copy
A web application containing Open Access journals and papers from multiple disciplines. Relevant resources are collected from all fields of research, from the natural and physical sciences to the social sciences and humanities. Users can search for journals and papers or expose their papers to a wider audience.
Proper citation: Paperity (RRID:SCR_013767) Copy
http://research.mssm.edu/cnic/tools-vias.html
A software application designed to allow multiple stacks of tiled optical sections obtained from Laser Scanning Microscopy to be integrated into a single volumetric dataset. VIAS allows the user to select the individual image stacks from disk and to adjust their relative position on the screen interactively. By using a global 3D coordinate system, users can manipulate stacks and execute the integration of the data after all the stacks of images have been correctly positioned. VIAS was designed with large datasets in mind. The current version of VIAS is Version 2.4, last updated on January 26, 2009.
Proper citation: Volume Integration and Alignment System (RRID:SCR_013800) Copy
A web application that recommends biomedical scientific articles based on articles saved to the users'''' library. Users can search the National Library of Medicine databases and store articles of interest in a cloud library, which can be accessed on a computer or mobile device and can be shared with colleagues.
Proper citation: PubChase (RRID:SCR_013769) Copy
http://stockcenter.vdrc.at/control/main
Biomaterial supply resource which collects, maintains, and distributes independent transgenic fly lines. Most of the 38,000 fly lines are RNAi lines, but VDRC also maintains a collection of enhancer-GAL4 driver lines. Nearly all lines are in duplicate. Users can search for the stocks or DNA constructs for the gene of interest by entering CG number, synonym, or Transformant ID.
Proper citation: Vienna Drosophila Resource Center (RRID:SCR_013805) Copy
A web application which allows users to access life science research articles in PDF format. Users can search across all affiliated institution's subscriptions. Tools are provided to manage papers, which include downloading citations and creating email alerts for new, relevant articles.
Proper citation: PubGet (RRID:SCR_013770) Copy
http://www.ccac.uni-koeln.de/index.htm
An institution and biomaterial supply resource which houses more than 3500 strains of algae. The majority of the strains are derived from freshwater/terrestrial habitats while 15% are representative of marine and brackish water strains. 15% of the strains are axenic. 50% of the strains are currently available to the public and can be ordered from the CCAC's main site.
Proper citation: Culture Collection of Algae at the University of Cologne (RRID:SCR_013772) Copy
http://bangaloreuniversity.ac.in
An institution located in Bangalore focused on higher education. The university has established Gandhi Bhavan, Dr. B.R. Ambedkar Study and Research Centre, and Centre for Study of Social Exclusion and Inclusive policy as well as schools of biological sciences, social sciences, and business studies.
Proper citation: Central College of Bangalore (RRID:SCR_013774) Copy
https://www.usaspending.gov/Pages/Default.aspx
Database of resources receiving federal financial assistance of more than $25,000. The Federal Funding Accountability and Transparency Act of 2006 was mandated to provide the public access to information regarding organizations and other entities receiving federal funding.
Proper citation: USAspending.gov (RRID:SCR_013738) Copy
http://www.bmnh.org.cn/Html/List/list48.html
A museum whose three main focuses are its specimen collection, academic research, and the popularization paleontology, zoology, botany, and anthropology.
Proper citation: Beijing Natural History Museum (RRID:SCR_013744) Copy
http://www.cyto.purdue.edu/flowcyt/software/Winmdi.htm
Software to analyze flow cytometry listmode data files.
Proper citation: WinMDI Software (RRID:SCR_013745) Copy
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