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Single-Cell Analysis of the Liver Epithelium Reveals Dynamic Heterogeneity and an Essential Role for YAP in Homeostasis and Regeneration.

Cell stem cell | 2019

The liver can substantially regenerate after injury, with both main epithelial cell types, hepatocytes and biliary epithelial cells (BECs), playing important roles in parenchymal regeneration. Beyond metabolic functions, BECs exhibit substantial plasticity and in some contexts can drive hepatic repopulation. Here, we performed single-cell RNA sequencing to examine BEC and hepatocyte heterogeneity during homeostasis and after injury. Instead of evidence for a transcriptionally defined progenitor-like BEC cell, we found significant homeostatic BEC heterogeneity that reflects fluctuating activation of a YAP-dependent program. This transcriptional signature defines a dynamic cellular state during homeostasis and is highly responsive to injury. YAP signaling is induced by physiological bile acids (BAs), required for BEC survival in response to BA exposure, and is necessary for hepatocyte reprogramming into biliary progenitors upon injury. Together, these findings uncover molecular heterogeneity within the ductal epithelium and reveal YAP as a protective rheostat and regenerative regulator in the mammalian liver.

Pubmed ID: 31080134 RIS Download

Antibodies used in this publication

Associated grants

  • Agency: NIAMS NIH HHS, United States
    Id: R01 AR064036
  • Agency: NIAID NIH HHS, United States
    Id: P01 AI039671
  • Agency: NCI NIH HHS, United States
    Id: R33 CA202820
  • Agency: NIAID NIH HHS, United States
    Id: U19 AI089992
  • Agency: Howard Hughes Medical Institute, United States
    Id: DRG-2274-16
  • Agency: NHGRI NIH HHS, United States
    Id: RM1 HG006193
  • Agency: NIGMS NIH HHS, United States
    Id: DP2 GM119419
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK047987
  • Agency: NIDDK NIH HHS, United States
    Id: P30 DK034854
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK099559
  • Agency: NIAID NIH HHS, United States
    Id: U24 AI118672
  • Agency: NIDDK NIH HHS, United States
    Id: F31 DK107049
  • Agency: NCI NIH HHS, United States
    Id: U54 CA217377
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK113080

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Fiji (tool)

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RRID:CVCL_DA06

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