Searching across hundreds of databases

Our searching services are busy right now. Your search will reload in five seconds.

X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Intrinsic Structural Features of the Human IRE1α Transmembrane Domain Sense Membrane Lipid Saturation.

Cell reports | 2019

Activation of inositol-requiring enzyme (IRE1α) is an indispensable step in remedying the cellular stress associated with lipid perturbation in the endoplasmic reticulum (ER) membrane. IRE1α is a single-spanning ER transmembrane protein possessing both kinase and endonuclease functions, and its activation can be fully achieved through the dimerization and/or oligomerization process. How IRE1α senses membrane lipid saturation remains largely unresolved. Using both computational and experimental tools, we systematically investigated the dimerization process of the transmembrane domain (TMD) of IRE1α and found that, with help of the serine 450 residue, the conserved tryptophan 457 residue buttresses the core dimerization interface of IRE1α-TMD. BiFC (bimolecular fluorescence complementation) experiments revealed that mutation on these residues abolished the saturated fatty acid-induced dimerization in the ER membrane and subsequently inactivated IRE1α activity in vivo. Therefore, our results suggest that the structural elements of IRE1α-TMD serve as a key sensor that detects membrane aberrancy.

Pubmed ID: 30943411 RIS Download

Additional research tools detected in this publication

Associated grants

  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM089866
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM079688
  • Agency: NIGMS NIH HHS, United States
    Id: R35 GM130292
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM113188
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK105393
  • Agency: NCI NIH HHS, United States
    Id: R21 CA176854

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

This is a list of tools and resources that we have found mentioned in this publication.


Addgene (tool)

RRID:SCR_002037

Non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. Facilitates archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources.

View all literature mentions

GAPDH antibody (antibody)

RRID:AB_1080976

This polyclonal targets GAPDH

View all literature mentions

Goat Anti-Rabbit IgG H&L (Alexa Fluor® 488) (antibody)

RRID:AB_2630356

This polyclonal secondary targets IgG (H+L)

View all literature mentions

IRE1α (14C10) Rabbit mAb (antibody)

RRID:AB_823545

This recombinant monoclonal targets IRE1-alpha

View all literature mentions

Calnexin (AF18) (antibody)

RRID:AB_626783

This monoclonal targets Calnexin (AF18)

View all literature mentions

Visual Molecular Dynamics (software resource)

RRID:SCR_001820

A molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS X, Unix, or Windows, is distributed free of charge, and includes source code.

View all literature mentions

SigmaPlot (software resource)

RRID:SCR_003210

Statistical analysis and scientific graphing software for Windows OS.

View all literature mentions

ImageJ (software resource)

RRID:SCR_003070

Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

View all literature mentions

PSIPRED (software resource)

RRID:SCR_010246

Web tool as secondary structure prediction method, incorporating two feed forward neural networks which perform analysis on output obtained from PSI-BLAST. Web server offering analyses of protein sequences.

View all literature mentions

GROMACS (software resource)

RRID:SCR_014565

A software package created to perform molecular dynamics. It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have many complicated bonded interactions, but it can also be used for research on non-biological systems, such as polymers.

View all literature mentions

PSIPRED (software resource)

RRID:SCR_010246

Web tool as secondary structure prediction method, incorporating two feed forward neural networks which perform analysis on output obtained from PSI-BLAST. Web server offering analyses of protein sequences.

View all literature mentions

Visual Molecular Dynamics (software resource)

RRID:SCR_001820

A molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS X, Unix, or Windows, is distributed free of charge, and includes source code.

View all literature mentions

GROMACS (software resource)

RRID:SCR_014565

A software package created to perform molecular dynamics. It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have many complicated bonded interactions, but it can also be used for research on non-biological systems, such as polymers.

View all literature mentions

SigmaPlot (software resource)

RRID:SCR_003210

Statistical analysis and scientific graphing software for Windows OS.

View all literature mentions

ImageJ (software resource)

RRID:SCR_003070

Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

View all literature mentions

Calnexin (AF18) (antibody)

RRID:AB_626783

This monoclonal targets Calnexin (AF18)

View all literature mentions

Goat Anti-Rabbit IgG H&L (Alexa Fluor® 488) (antibody)

RRID:AB_2630356

This polyclonal secondary targets IgG (H+L)

View all literature mentions

GAPDH antibody (antibody)

RRID:AB_1080976

This polyclonal targets GAPDH

View all literature mentions

IRE1α (14C10) Rabbit mAb (antibody)

RRID:AB_823545

This recombinant monoclonal targets IRE1-alpha

View all literature mentions