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p62/SQSTM1 Fuels Melanoma Progression by Opposing mRNA Decay of a Selective Set of Pro-metastatic Factors.

Cancer cell | 2019

Modulators of mRNA stability are not well understood in melanoma, an aggressive tumor with complex changes in the transcriptome. Here we report the ability of p62/SQSTM1 to extend mRNA half-life of a spectrum of pro-metastatic factors. These include FERMT2 and other transcripts with no previous links to melanoma. Transcriptomic, proteomic, and interactomic analyses, combined with validation in clinical biopsies and mouse models, identified a selected set of RNA-binding proteins (RBPs) recruited by p62, with IGF2BP1 as a key partner. This p62-RBP interaction distinguishes melanoma from other tumors where p62 controls autophagy or oxidative stress. The relevance of these data is emphasized by follow-up analyses of patient prognosis revealing p62 and FERMT2 as adverse determinants of disease-free survival.

Pubmed ID: 30581152 RIS Download

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This is a list of tools and resources that we have found mentioned in this publication.


ATCC (tool)

RRID:SCR_001672

Global nonprofit biological resource center (BRC) and research organization that provides biological products, technical services and educational programs to private industry, government and academic organizations. Its mission is to acquire, authenticate, preserve, develop and distribute biological materials, information, technology, intellectual property and standards for the advancement and application of scientific knowledge. The primary purpose of ATCC is to use its resources and experience as a BRC to become the world leader in standard biological reference materials management, intellectual property resource management and translational research as applied to biomaterial development, standardization and certification. ATCC characterizes cell lines, bacteria, viruses, fungi and protozoa, as well as develops and evaluates assays and techniques for validating research resources and preserving and distributing biological materials to the public and private sector research communities.

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Addgene (tool)

RRID:SCR_002037

Non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. Facilitates archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources.

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ProteomeXchange (tool)

RRID:SCR_004055

A data repository for proteomic data sets. The ProteomeExchange consortium, as a whole, aims to provide a coordinated submission of MS proteomics data to the main existing proteomics repositories, as well as to encourage optimal data dissemination. ProteomeXchange provides access to a number of public databases, and users can access and submit data sets to the consortium's PRIDE database and PASSEL/PeptideAtlas.

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BioCarta Pathways (tool)

RRID:SCR_006917

BioCarta Pathways allows users to observe how genes interact in dynamic graphical models. Online maps available within this resource depict molecular relationships from areas of active research. In an open source approach, this community-fed forum constantly integrates emerging proteomic information from the scientific community. It also catalogs and summarizes important resources providing information for over 120,000 genes from multiple species. Find both classical pathways as well as current suggestions for new pathways.

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Program to Reduce Incontinence by Diet and Exercise (tool)

RRID:SCR_009018

Randomized controlled trial being conducted at two clinical centers in the United States to learn more about the effects of weight loss on urinary incontinence. About 330 overweight women aged 30 or older will participate and will be followed for 18 months. Efficacy of weight reduction as a treatment for urinary incontinence will be examined at 6 months following the intensive weight control program, and the sustained impact of the intervention will be examined at 18 months. To increase the maintenance of weight reduction and facilitate evaluation of the enduring impact of weight loss on urinary incontinence, they propose to study a motivation-based weight maintenance program. At the end of the intensive weight control program, women randomized to the weight loss program will be randomized to either a 12-month skill-based maintenance intervention or to a motivation-based maintenance intervention. The maintenance interventions maximize the potential for sustained weight loss and will allow them to determine if long-term weight reduction will produce continued improvement in urinary incontinence.

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cBioPortal (tool)

RRID:SCR_014555

A portal that provides visualization, analysis and download of large-scale cancer genomics data sets.

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LC3B Antibody (antibody)

RRID:AB_915950

This polyclonal targets LC3B

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HA-Tag Antibody (F-7) (antibody)

RRID:AB_627809

This monoclonal targets HA-Tag

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H3-celegans (antibody)

RRID:AB_302613

This polyclonal targets H3

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Mouse Anti-Human NBR1 Monoclonal Antibody, Unconjugated, Clone 6B11 (antibody)

RRID:AB_1016849

This monoclonal targets NBR1 monoclonal antibody (M01) clone 6B11

View all literature mentions

Anti-β-Actin Antibody (antibody)

RRID:AB_476744

This monoclonal targets slightly modified β-cytoplasmic actin N-terminal peptide, Ac-Asp-Asp-Asp-Ile-Ala-Ala-Leu-Val-Ile-Asp-Asn-Gly-Ser-Gly-Lys, conjugated to KLH

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KEAP1 antibody (antibody)

RRID:AB_2132625

This polyclonal targets KEAP1

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GFP-avictoria (antibody)

RRID:AB_303395

This polyclonal targets GFP

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SQSTM1 / p62 antibody (antibody)

RRID:AB_10675814

This polyclonal targets SQSTM1 / p62 antibody

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IGF2BP1-human (antibody)

RRID:AB_1570640

This polyclonal targets IGF2BP1

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Atg5 Antibody (antibody)

RRID:AB_2062340

This polyclonal targets ATG5

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p62 Lck Ligand (antibody)

RRID:AB_398151

This monoclonal targets p62 Lck Ligand

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Lamin B (C-20) (antibody)

RRID:AB_648156

This polyclonal targets LMNB1

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IMP1 (D33A2) Rabbit mAb (antibody)

RRID:AB_11179079

This monoclonal targets IGF2BP1

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Sox-10 (N-20) (antibody)

RRID:AB_2195374

This unknown targets Raised against peptide mapping to N-terminus of sox-10 of human origin

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Kindlin 2 antibody (antibody)

RRID:AB_2278298

This polyclonal targets FERMT2

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Rabbit IgG Control Antibody, Unconjugated (antibody)

RRID:AB_1163659

This unknown targets Rabbit IgG Control

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HA-Tag Antibody (F-7) (antibody)

RRID:AB_627809

This monoclonal targets HA-Tag

View all literature mentions

GFP-avictoria (antibody)

RRID:AB_303395

This polyclonal targets GFP

View all literature mentions

Lamin B (C-20) (antibody)

RRID:AB_648156

This polyclonal targets LMNB1

View all literature mentions

H3-celegans (antibody)

RRID:AB_302613

This polyclonal targets H3

View all literature mentions

Rabbit IgG Control Antibody, Unconjugated (antibody)

RRID:AB_1163659

This unknown targets Rabbit IgG Control

View all literature mentions

Kindlin 2 antibody (antibody)

RRID:AB_2278298

This polyclonal targets FERMT2

View all literature mentions

Sox-10 (N-20) (antibody)

RRID:AB_2195374

This unknown targets Raised against peptide mapping to N-terminus of sox-10 of human origin

View all literature mentions

SQSTM1 / p62 antibody (antibody)

RRID:AB_10675814

This polyclonal targets SQSTM1 / p62 antibody

View all literature mentions

p62 Lck Ligand (antibody)

RRID:AB_398151

This monoclonal targets p62 Lck Ligand

View all literature mentions

Mouse Anti-Human NBR1 Monoclonal Antibody, Unconjugated, Clone 6B11 (antibody)

RRID:AB_1016849

This monoclonal targets NBR1 monoclonal antibody (M01) clone 6B11

View all literature mentions

LC3B Antibody (antibody)

RRID:AB_915950

This polyclonal targets LC3B

View all literature mentions

KEAP1 antibody (antibody)

RRID:AB_2132625

This polyclonal targets KEAP1

View all literature mentions

IGF2BP1-human (antibody)

RRID:AB_1570640

This polyclonal targets IGF2BP1

View all literature mentions

IMP1 (D33A2) Rabbit mAb (antibody)

RRID:AB_11179079

This monoclonal targets IGF2BP1

View all literature mentions

Anti-β-Actin Antibody (antibody)

RRID:AB_476744

This monoclonal targets slightly modified β-cytoplasmic actin N-terminal peptide, Ac-Asp-Asp-Asp-Ile-Ala-Ala-Leu-Val-Ile-Asp-Asn-Gly-Ser-Gly-Lys, conjugated to KLH

View all literature mentions

Atg5 Antibody (antibody)

RRID:AB_2062340

This polyclonal targets ATG5

View all literature mentions