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A Developmental Program Truncates Long Transcripts to Temporally Regulate Cell Signaling.

Developmental cell | 2018

Rapid mitotic divisions and a fixed transcription rate limit the maximal length of transcripts in early Drosophila embryos. Previous studies suggested that transcription of long genes is initiated but aborted, as early nuclear divisions have short interphases. Here, we identify long genes that are expressed during short nuclear cycles as truncated transcripts. The RNA binding protein Sex-lethal physically associates with transcripts for these genes and is required to support early termination to specify shorter transcript isoforms in early embryos of both sexes. In addition, one truncated transcript for the gene short-gastrulation encodes a product in embryos that functionally relates to a previously characterized dominant-negative form, which maintains TGF-β signaling in the off-state. In summary, our results reveal a developmental program of short transcripts functioning to help temporally regulate Drosophila embryonic development, keeping cell signaling at early stages to a minimum in order to support its proper initiation at cellularization.

Pubmed ID: 30562515 RIS Download

Research resources used in this publication

Associated grants

  • Agency: NIGMS NIH HHS, United States
    Id: R35 GM118146

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This is a list of tools and resources that we have found mentioned in this publication.


Addgene (tool)

RRID:SCR_002037

Non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. Facilitates archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources.

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Bowtie (tool)

RRID:SCR_005476

Software ultrafast memory efficient tool for aligning sequencing reads. Bowtie is short read aligner.

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Drosophila Genomics Resource Center (tool)

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Serves Drosophila research community by collecting and distributing DNA clones and vectors; collecting and distributing Drosophila cell lines; developing and testing genomics technologies for use in Drosophila and assisting members of the research community in their use.

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Ultrabithorax and abdominal-A proteins (all isoforms) antibody - White, R.; University of Cambridge (antibody)

RRID:AB_10660834

This monoclonal targets Ultrabithorax and abdominal-A proteins (all isoforms)

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H3-celegans (antibody)

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Goat Anti-Mouse IgG, HRP conjugate (antibody)

RRID:AB_390192

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sex-lethal protein antibody - Schedl, P.; (antibody)

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Phospho-Smad1/5 (Ser463/465) (41D10) Rabbit mAb (antibody)

RRID:AB_491015

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Ultrabithorax and abdominal-A proteins (all isoforms) antibody - White, R.; University of Cambridge (antibody)

RRID:AB_10660834

This monoclonal targets Ultrabithorax and abdominal-A proteins (all isoforms)

View all literature mentions

H3-celegans (antibody)

RRID:AB_302613

This polyclonal targets H3

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sex-lethal protein antibody - Schedl, P.; (antibody)

RRID:AB_528464

This monoclonal targets sex-lethal protein

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Phospho-Smad1/5 (Ser463/465) (41D10) Rabbit mAb (antibody)

RRID:AB_491015

This monoclonal targets Phospho-Smad1/5 (Ser463/465) (41D10) Rabbit mAb

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Goat Anti-Mouse IgG, HRP conjugate (antibody)

RRID:AB_390192

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