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The HDAC-Associated Sin3B Protein Represses DREAM Complex Targets and Cooperates with APC/C to Promote Quiescence.

Cell reports | 2018

The mammalian DREAM complex is responsible for the transcriptional repression of hundreds of cell-cycle-related genes in quiescence. How the DREAM complex recruits chromatin-modifying entities to aid in its repression remains unknown. Using unbiased proteomics analysis, we have uncovered a robust association between the chromatin-associated Sin3B protein and the DREAM complex. We have determined that genetic inactivation of Sin3B results in the de-repression of DREAM target genes during quiescence but is insufficient to allow quiescent cells to resume proliferation. However, inactivation of APC/CCDH1 was sufficient for Sin3B-/- cells, but not parental cells, to re-enter the cell cycle. These studies identify Sin3B as a transcriptional corepressor associated with the DREAM complex in quiescence and reveals a functional cooperation between E2F target repression and APC/CCDH1 in the negative regulation of cell-cycle progression.

Pubmed ID: 30517867 RIS Download

Research resources used in this publication

Antibodies used in this publication

Associated grants

  • Agency: NCI NIH HHS, United States
    Id: T32 CA009161
  • Agency: NCI NIH HHS, United States
    Id: P30 CA016087
  • Agency: NCI NIH HHS, United States
    Id: R21 CA206013
  • Agency: NCI NIH HHS, United States
    Id: F30 CA203047
  • Agency: NIGMS NIH HHS, United States
    Id: T32 GM007308
  • Agency: NIGMS NIH HHS, United States
    Id: T32 GM066704
  • Agency: NCI NIH HHS, United States
    Id: R01 CA148639
  • Agency: NCI NIH HHS, United States
    Id: R01 CA188571
  • Agency: NCI NIH HHS, United States
    Id: R21 CA155736

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

This is a list of tools and resources that we have found mentioned in this publication.


ATCC (tool)

RRID:SCR_001672

Global nonprofit biological resource center (BRC) and research organization that provides biological products, technical services and educational programs to private industry, government and academic organizations. Its mission is to acquire, authenticate, preserve, develop and distribute biological materials, information, technology, intellectual property and standards for the advancement and application of scientific knowledge. The primary purpose of ATCC is to use its resources and experience as a BRC to become the world leader in standard biological reference materials management, intellectual property resource management and translational research as applied to biomaterial development, standardization and certification. ATCC characterizes cell lines, bacteria, viruses, fungi and protozoa, as well as develops and evaluates assays and techniques for validating research resources and preserving and distributing biological materials to the public and private sector research communities.

View all literature mentions

QIAGEN (tool)

RRID:SCR_008539

A commercial organization which provides assay technologies to isolate DNA, RNA, and proteins from any biological sample. Assay technologies are then used to make specific target biomolecules, such as the DNA of a specific virus, visible for subsequent analysis.

View all literature mentions

Millipore (tool)

RRID:SCR_008983

An Antibody supplier

View all literature mentions

Trimmomatic (tool)

RRID:SCR_011848

Software Java pipeline for trimming tasks for Illumina paired end and single ended data. Flexible Trimmer for Illumina Sequence Data. Pair aware preprocessing tool optimized for Illumina next generation sequencing data. Includes several processing steps for read trimming and filtering. Operating systems Unix/Linux, Mac OS, Windows.

View all literature mentions

htseq-count (tool)

RRID:SCR_011867

Script distributed with the HT-Seq Python framework for processing RNA-seq or DNA-seq data.

View all literature mentions

edgeR (tool)

RRID:SCR_012802

Bioconductor software package for Empirical analysis of Digital Gene Expression data in R. Used for differential expression analysis of RNA-seq and digital gene expression data with biological replication.

View all literature mentions

Abcam (tool)

RRID:SCR_012931

A commercial antibody supplier which supplies primary and secondary antibodies, biochemicals, proteins, peptides, lysates, immunoassays and other kits.

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Bethyl (tool)

RRID:SCR_013554

An Antibody supplier

View all literature mentions

Enrichr (tool)

RRID:SCR_001575

A web-based gene list enrichment analysis tool that provides various types of visualization summaries of collective functions of gene lists. It includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to display enrichment results using the JavaScript library, Data Driven Documents (D3). The software can also be embedded into any tool that performs gene list analysis. System-wide profiling of genes and proteins in mammalian cells produce lists of differentially expressed genes / proteins that need to be further analyzed for their collective functions in order to extract new knowledge. Once unbiased lists of genes or proteins are generated from such experiments, these lists are used as input for computing enrichment with existing lists created from prior knowledge organized into gene-set libraries.

View all literature mentions

Addgene (tool)

RRID:SCR_002037

Non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. Facilitates archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources.

View all literature mentions

TopHat (tool)

RRID:SCR_013035

Software tool for fast and high throughput alignment of shotgun cDNA sequencing reads generated by transcriptomics technologies. Fast splice junction mapper for RNA-Seq reads. Aligns RNA-Seq reads to mammalian-sized genomes using ultra high-throughput short read aligner Bowtie, and then analyzes mapping results to identify splice junctions between exons.TopHat2 is accurate alignment of transcriptomes in presence of insertions, deletions and gene fusions.

View all literature mentions

New England Biolabs (tool)

RRID:SCR_013517

An Antibody supplier

View all literature mentions

New York University School of Medicine Langone Health Microscopy Laboratory Core Facility (tool)

RRID:SCR_017934

Core offers comprehensive light and electron microscopy technologies. Our scientists use light microscopes and electron microscopes at resolutions ranging from centimeters to angstroms, providing clear and detailed images.We assist at every stage of your experiment, offering research-design consultation and instrument training, as well as guidance in study execution, analysis, and presentation for publication.

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T98G (tool)

RRID:CVCL_0556

Cell line T98G is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

HEK293T (tool)

RRID:CVCL_0063

Cell line HEK293T is a Transformed cell line with a species of origin Homo sapiens (Human)

View all literature mentions

NIH 3T3 (tool)

RRID:CVCL_0594

Cell line NIH 3T3 is a Spontaneously immortalized cell line with a species of origin Mus musculus

View all literature mentions

Histone Deacetylase 3 (HDAC3) Antibody (antibody)

RRID:AB_331545

This polyclonal targets Histone Deacetylase 3 (HDAC3)

View all literature mentions

APC anti-mouse Ki-67 (antibody)

RRID:AB_2561929

This monoclonal targets Ki-67

View all literature mentions

p21 (C-19) (antibody)

RRID:AB_632126

This unknown targets Raised against a peptide mapping at the carboxy terminus of human p21

View all literature mentions

Purified Rabbit IgG (antibody)

RRID:AB_479829

This unknown targets IgG

View all literature mentions

Anti-Ki-67 (antibody)

RRID:AB_2142366

This polyclonal targets Ki-67

View all literature mentions

p27 Kip1 Antibody (antibody)

RRID:AB_10693314

This unknown targets p27 Kip1

View all literature mentions

Myc-Tag (9B11) Mouse mAb (antibody)

RRID:AB_331783

This monoclonal targets c-Myc

View all literature mentions

c-Kit (M-14) (antibody)

RRID:AB_631032

This polyclonal targets c-Kit (M-14)

View all literature mentions

Rb (Rb1) (antibody)

RRID:AB_1128965

This monoclonal targets RB1

View all literature mentions

mSin3A (K-20) (antibody)

RRID:AB_2187760

This polyclonal targets SIN3A

View all literature mentions

FLAG-synthetic (antibody)

RRID:AB_2616449

This unknown targets FLAG

View all literature mentions

B-Myb (N-19) (antibody)

RRID:AB_631985

This polyclonal targets MYBL2

View all literature mentions

APC anti-mouse IgG2a (antibody)

RRID:AB_2561754

This monoclonal targets IgG2a

View all literature mentions

mSin3B (H-5) (antibody)

RRID:AB_2187789

This monoclonal targets SIN3B

View all literature mentions

SIN3B-human (antibody)

RRID:AB_628254

This monoclonal targets SIN3B

View all literature mentions

cyclin E (HE12) (antibody)

RRID:AB_627357

This monoclonal targets cyclin E (HE12)

View all literature mentions

FITC anti-BrdU (antibody)

RRID:AB_2564480

This monoclonal targets BrdU

View all literature mentions

H3-celegans (antibody)

RRID:AB_302613

This polyclonal targets H3

View all literature mentions

Vinculin (E1E9V) XP® (antibody)

RRID:AB_2728768

This monoclonal targets Vinculin

View all literature mentions

p130 (C-20) (antibody)

RRID:AB_632093

This polyclonal targets RBL2

View all literature mentions

Monoclonal Anti-Vinculin antibody produced in mouse (antibody)

RRID:AB_477629

This monoclonal targets Vinculin antibody produced in mouse

View all literature mentions

HA-Tag Antibody (F-7) (antibody)

RRID:AB_627809

This monoclonal targets HA-Tag

View all literature mentions

Cyclin F (antibody)

RRID:AB_2071212

This unknown targets Epitope mapping at the C-terminus of cyclin F of human origin

View all literature mentions

cyclin A (C-19) (antibody)

RRID:AB_631330

This polyclonal targets CCNA2

View all literature mentions

H3K9ac-human (antibody)

RRID:AB_310308

This polyclonal targets H3K9ac

View all literature mentions

Anti-α-Tubulin antibody (antibody)

RRID:AB_477593

This monoclonal targets α-Tubulin

View all literature mentions

Anti-Ki-67 (antibody)

RRID:AB_2142366

This polyclonal targets Ki-67

View all literature mentions

mSin3B (H-5) (antibody)

RRID:AB_2187789

This monoclonal targets SIN3B

View all literature mentions

mSin3B (H-5) (antibody)

RRID:AB_2187789

This monoclonal targets SIN3B

View all literature mentions

mSin3A (K-20) (antibody)

RRID:AB_2187760

This polyclonal targets SIN3A

View all literature mentions

Anti-Ki-67 (antibody)

RRID:AB_2142366

This polyclonal targets Ki-67

View all literature mentions

SIN3B-human (antibody)

RRID:AB_628254

This monoclonal targets SIN3B

View all literature mentions

cyclin A (C-19) (antibody)

RRID:AB_631330

This polyclonal targets CCNA2

View all literature mentions

cyclin E (HE12) (antibody)

RRID:AB_627357

This monoclonal targets cyclin E (HE12)

View all literature mentions

Cyclin F (antibody)

RRID:AB_2071212

This unknown targets Epitope mapping at the C-terminus of cyclin F of human origin

View all literature mentions

p27 Kip1 Antibody (antibody)

RRID:AB_10693314

This unknown targets p27 Kip1

View all literature mentions

p130 (C-20) (antibody)

RRID:AB_632093

This polyclonal targets RBL2

View all literature mentions

B-Myb (N-19) (antibody)

RRID:AB_631985

This polyclonal targets MYBL2

View all literature mentions

H3-celegans (antibody)

RRID:AB_302613

This polyclonal targets H3

View all literature mentions

Anti-Ki-67 (antibody)

RRID:AB_2142366

This polyclonal targets Ki-67

View all literature mentions

B-Myb (N-19) (antibody)

RRID:AB_631985

This polyclonal targets MYBL2

View all literature mentions

SIN3B-human (antibody)

RRID:AB_628254

This monoclonal targets SIN3B

View all literature mentions

p21 (C-19) (antibody)

RRID:AB_632126

This unknown targets Raised against a peptide mapping at the carboxy terminus of human p21

View all literature mentions

mSin3A (K-20) (antibody)

RRID:AB_2187760

This polyclonal targets SIN3A

View all literature mentions

Histone Deacetylase 3 (HDAC3) Antibody (antibody)

RRID:AB_331545

This polyclonal targets Histone Deacetylase 3 (HDAC3)

View all literature mentions

p27 Kip1 Antibody (antibody)

RRID:AB_10693314

This unknown targets p27 Kip1

View all literature mentions

c-Kit (M-14) (antibody)

RRID:AB_631032

This polyclonal targets c-Kit (M-14)

View all literature mentions

FITC anti-BrdU (antibody)

RRID:AB_2564480

This monoclonal targets BrdU

View all literature mentions

Rb (Rb1) (antibody)

RRID:AB_1128965

This monoclonal targets RB1

View all literature mentions

H3K9ac-human (antibody)

RRID:AB_310308

This polyclonal targets H3K9ac

View all literature mentions

p130 (C-20) (antibody)

RRID:AB_632093

This polyclonal targets RBL2

View all literature mentions

APC anti-mouse Ki-67 (antibody)

RRID:AB_2561929

This monoclonal targets Ki-67

View all literature mentions

cyclin A (C-19) (antibody)

RRID:AB_631330

This polyclonal targets CCNA2

View all literature mentions

Vinculin (E1E9V) XP® (antibody)

RRID:AB_2728768

This monoclonal targets Vinculin

View all literature mentions

Anti-α-Tubulin antibody (antibody)

RRID:AB_477593

This monoclonal targets α-Tubulin

View all literature mentions

Histone Deacetylase 3 (HDAC3) Antibody (antibody)

RRID:AB_331545

This polyclonal targets Histone Deacetylase 3 (HDAC3)

View all literature mentions

Monoclonal Anti-Vinculin antibody produced in mouse (antibody)

RRID:AB_477629

This monoclonal targets Vinculin antibody produced in mouse

View all literature mentions

H3K9ac-human (antibody)

RRID:AB_310308

This polyclonal targets H3K9ac

View all literature mentions

FLAG-synthetic (antibody)

RRID:AB_2616449

This unknown targets FLAG

View all literature mentions

FITC anti-BrdU (antibody)

RRID:AB_2564480

This monoclonal targets BrdU

View all literature mentions

Vinculin (E1E9V) XP® (antibody)

RRID:AB_2728768

This monoclonal targets Vinculin

View all literature mentions

H3-celegans (antibody)

RRID:AB_302613

This polyclonal targets H3

View all literature mentions

c-Kit (M-14) (antibody)

RRID:AB_631032

This polyclonal targets c-Kit (M-14)

View all literature mentions

APC anti-mouse Ki-67 (antibody)

RRID:AB_2561929

This monoclonal targets Ki-67

View all literature mentions

Cyclin F (antibody)

RRID:AB_2071212

This unknown targets Epitope mapping at the C-terminus of cyclin F of human origin

View all literature mentions

cyclin E (HE12) (antibody)

RRID:AB_627357

This monoclonal targets cyclin E (HE12)

View all literature mentions

p21 (C-19) (antibody)

RRID:AB_632126

This unknown targets Raised against a peptide mapping at the carboxy terminus of human p21

View all literature mentions

Purified Rabbit IgG (antibody)

RRID:AB_479829

This unknown targets IgG

View all literature mentions

FLAG-synthetic (antibody)

RRID:AB_2616449

This unknown targets FLAG

View all literature mentions

HA-Tag Antibody (F-7) (antibody)

RRID:AB_627809

This monoclonal targets HA-Tag

View all literature mentions

Myc-Tag (9B11) Mouse mAb (antibody)

RRID:AB_331783

This monoclonal targets c-Myc

View all literature mentions

HA-Tag Antibody (F-7) (antibody)

RRID:AB_627809

This monoclonal targets HA-Tag

View all literature mentions

Myc-Tag (9B11) Mouse mAb (antibody)

RRID:AB_331783

This monoclonal targets c-Myc

View all literature mentions

APC anti-mouse IgG2a (antibody)

RRID:AB_2561754

This monoclonal targets IgG2a

View all literature mentions

Purified Rabbit IgG (antibody)

RRID:AB_479829

This unknown targets IgG

View all literature mentions

APC anti-mouse IgG2a (antibody)

RRID:AB_2561754

This monoclonal targets IgG2a

View all literature mentions

Rb (Rb1) (antibody)

RRID:AB_1128965

This monoclonal targets RB1

View all literature mentions

Monoclonal Anti-Vinculin antibody produced in mouse (antibody)

RRID:AB_477629

This monoclonal targets Vinculin antibody produced in mouse

View all literature mentions

Anti-α-Tubulin antibody (antibody)

RRID:AB_477593

This monoclonal targets α-Tubulin

View all literature mentions