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Oncogenic Amplification of Zygotic Dux Factors in Regenerating p53-Deficient Muscle Stem Cells Defines a Molecular Cancer Subtype.

Cell stem cell | 2018

The identity of tumor-initiating cells in many cancer types is unknown. Tumors often express genes associated with embryonic development, although the contributions of zygotic programs to tumor initiation and formation are poorly understood. Here, we show that regeneration-induced loss of quiescence in p53-deficient muscle stem cells (MuSCs) results in rhabdomyosarcoma formation with 100% penetrance. Genomic analyses of purified tumor cells revealed spontaneous and discrete oncogenic amplifications in MuSCs that drive tumorigenesis, including, but not limited to, the amplification of the cleavage-stage Dux transcription factor (TF) Duxbl. We further found that Dux factors drive an early embryonic gene signature that defines a molecular subtype across a broad range of human cancers. Duxbl initiates tumorigenesis by enforcing a mesenchymal-to-epithelial transition, and targeted inactivation of Duxbl specifically in Duxbl-expressing tumor cells abolishes their expansion. These findings reveal how regeneration and genomic instability can interact to activate zygotic genes that drive tumor initiation and growth.

Pubmed ID: 30449715 RIS Download

Research resources used in this publication

Additional research tools detected in this publication

Associated grants

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This is a list of tools and resources that we have found mentioned in this publication.


Addgene (tool)

RRID:SCR_002037

Non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. Facilitates archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources.

View all literature mentions

Circos (tool)

RRID:SCR_011798

A software package for visualizing data and information. It visualizes data in a circular layout - this makes Circos ideal for exploring relationships between objects or positions.

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GENCODE (tool)

RRID:SCR_014966

Human and mouse genome annotation project which aims to identify all gene features in the human genome using computational analysis, manual annotation, and experimental validation.

View all literature mentions

Histone H2A.X Antibody (antibody)

RRID:AB_10694556

This polyclonal targets Histone H2A.X

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Anti-Desmin antibody produced in rabbit (antibody)

RRID:AB_476910

This polyclonal targets Desmin antibody produced in rabbit

View all literature mentions

Anti-MYOG polyclonal antibody (antibody)

RRID:AB_10674546

This polyclonal targets MYOG

View all literature mentions

p53 Tumor Suppressor Protein (antibody)

RRID:AB_563933

This unknown targets Recombinant mouse p53 protein

View all literature mentions

53BP1 antibody (antibody)

RRID:AB_722497

This polyclonal targets 53BP1 antibody

View all literature mentions

Anti-ATM / ATR Substrate, phospho (Ser / Thr) Antibody, Unconjugated (antibody)

RRID:AB_330318

This unknown targets ATM / ATR Substrate, phospho (Ser / Thr)

View all literature mentions

E-Cadherin (antibody)

RRID:AB_397581

This monoclonal targets E-Cadherin

View all literature mentions

MyoD1 antibody (antibody)

RRID:AB_2266875

This polyclonal targets MYOD1

View all literature mentions

C57BL/10ScSn-Dmdmdx/J (organism)

RRID:IMSR_JAX:001801

Mus musculus with name C57BL/10ScSn-Dmdmdx/J from IMSR.

View all literature mentions

B6.129P2-Trp53tm1Brn/J (organism)

RRID:IMSR_JAX:008462

Mus musculus with name B6.129P2-Trp53tm1Brn/J from IMSR.

View all literature mentions

R Project for Statistical Computing (software resource)

RRID:SCR_001905

Software environment and programming language for statistical computing and graphics. R is integrated suite of software facilities for data manipulation, calculation and graphical display. Can be extended via packages. Some packages are supplied with the R distribution and more are available through CRAN family.It compiles and runs on wide variety of UNIX platforms, Windows and MacOS.

View all literature mentions

Picard (software toolkit)

RRID:SCR_006525

Java toolset for working with next generation sequencing data in the BAM format.

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STAR (software resource)

RRID:SCR_015899

Software performing alignment of high-throughput RNA-seq data. Aligns RNA-seq reads to reference genome using uncompressed suffix arrays.

View all literature mentions

B6.Cg-Gt(ROSA)26Sortm14(CAG-tdTomato)Hze/J (organism)

RRID:IMSR_JAX:007914

Mus musculus with name B6.Cg-Gt(ROSA)26Sortm14(CAG-tdTomato)Hze/J from IMSR.

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GraphPad Prism (software resource)

RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

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GATK (software resource)

RRID:SCR_001876

A software package to analyze next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. This software library makes writing efficient analysis tools using next-generation sequencing data very easy, and second it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner. (entry from Genetic Analysis Software)

View all literature mentions

GATK (software resource)

RRID:SCR_001876

A software package to analyze next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. This software library makes writing efficient analysis tools using next-generation sequencing data very easy, and second it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner. (entry from Genetic Analysis Software)

View all literature mentions

Picard (software toolkit)

RRID:SCR_006525

Java toolset for working with next generation sequencing data in the BAM format.

View all literature mentions

STAR (software resource)

RRID:SCR_015899

Software performing alignment of high-throughput RNA-seq data. Aligns RNA-seq reads to reference genome using uncompressed suffix arrays.

View all literature mentions

GraphPad Prism (software resource)

RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

View all literature mentions

R Project for Statistical Computing (software resource)

RRID:SCR_001905

Software environment and programming language for statistical computing and graphics. R is integrated suite of software facilities for data manipulation, calculation and graphical display. Can be extended via packages. Some packages are supplied with the R distribution and more are available through CRAN family.It compiles and runs on wide variety of UNIX platforms, Windows and MacOS.

View all literature mentions

C57BL/10ScSn-Dmdmdx/J (organism)

RRID:IMSR_JAX:001801

Mus musculus with name C57BL/10ScSn-Dmdmdx/J from IMSR.

View all literature mentions

B6.Cg-Gt(ROSA)26Sortm14(CAG-tdTomato)Hze/J (organism)

RRID:IMSR_JAX:007914

Mus musculus with name B6.Cg-Gt(ROSA)26Sortm14(CAG-tdTomato)Hze/J from IMSR.

View all literature mentions

B6.129P2-Trp53tm1Brn/J (organism)

RRID:IMSR_JAX:008462

Mus musculus with name B6.129P2-Trp53tm1Brn/J from IMSR.

View all literature mentions

E-Cadherin (antibody)

RRID:AB_397581

This monoclonal targets E-Cadherin

View all literature mentions

Anti-Desmin antibody produced in rabbit (antibody)

RRID:AB_476910

This polyclonal targets Desmin antibody produced in rabbit

View all literature mentions

Anti-MYOG polyclonal antibody (antibody)

RRID:AB_10674546

This polyclonal targets MYOG

View all literature mentions

p53 Tumor Suppressor Protein (antibody)

RRID:AB_563933

This unknown targets Recombinant mouse p53 protein

View all literature mentions

MyoD1 antibody (antibody)

RRID:AB_2266875

This polyclonal targets MYOD1

View all literature mentions

53BP1 antibody (antibody)

RRID:AB_722497

This polyclonal targets 53BP1 antibody

View all literature mentions

Anti-ATM / ATR Substrate, phospho (Ser / Thr) Antibody, Unconjugated (antibody)

RRID:AB_330318

This unknown targets ATM / ATR Substrate, phospho (Ser / Thr)

View all literature mentions

Histone H2A.X Antibody (antibody)

RRID:AB_10694556

This polyclonal targets Histone H2A.X

View all literature mentions