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Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating.

Cell reports | 2018

The proteasome is the central protease for intracellular protein breakdown. Coordinated binding and hydrolysis of ATP by the six proteasomal ATPase subunits induces conformational changes that drive the unfolding and translocation of substrates into the proteolytic 20S core particle for degradation. Here, we combine genetic and biochemical approaches with cryo-electron microscopy and integrative modeling to dissect the relationship between individual nucleotide binding events and proteasome conformational dynamics. We demonstrate unique impacts of ATP binding by individual ATPases on the proteasome conformational distribution and report two conformational states of the proteasome suggestive of a rotary ATP hydrolysis mechanism. These structures, coupled with functional analyses, reveal key roles for the ATPases Rpt1 and Rpt6 in gating substrate entry into the core particle. This deepened knowledge of proteasome conformational dynamics reveals key elements of intersubunit communication within the proteasome and clarifies the regulation of substrate entry into the proteolytic chamber.

Pubmed ID: 30067984 RIS Download

Associated grants

  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM118600

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

This is a list of tools and resources that we have found mentioned in this publication.


GraphPad Prism (tool)

RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

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NAMD (tool)

RRID:SCR_014894

Parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-compatible with AMBER, CHARMM, and X-PLOR.

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Visual Molecular Dynamics (tool)

RRID:SCR_001820

A molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS X, Unix, or Windows, is distributed free of charge, and includes source code.

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SerialEM (tool)

RRID:SCR_017293

Software tool for automated EM data acquisition. Used for efficient tilt series acquisition and interface for image capture, display, and storage and for control of some aspects of microscope function.

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Rabbit Anti-Glucose-6-Phosphate Dehydrogenase (G-6-PDH) Antibody, Unconjugated (antibody)

RRID:AB_258454

This unknown targets Glucose-6-Phosphate Dehydrogenase (G-6-PDH)

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Anti-Ubiquitin Antibody (P4D1) (antibody)

RRID:AB_628423

This monoclonal targets Ubiquitin

View all literature mentions

Proteasome 19S Rpt5/S6a subunit, pAb (antibody)

RRID:AB_10555018

This polyclonal targets Proteasome 19S Rpt5/S6a subunit pAb

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Proteasome 19S Rpt2/S4 (mts2) subunit, pAb (antibody)

RRID:AB_10541229

This polyclonal targets Proteasome 19S Rpt2/S4 (mts2) subunit pAb

View all literature mentions

Rabbit Anti-Glucose-6-Phosphate Dehydrogenase (G-6-PDH) Antibody, Unconjugated (antibody)

RRID:AB_258454

This unknown targets Glucose-6-Phosphate Dehydrogenase (G-6-PDH)

View all literature mentions

Anti-Ubiquitin Antibody (P4D1) (antibody)

RRID:AB_628423

This monoclonal targets Ubiquitin

View all literature mentions

Rabbit Anti-Glucose-6-Phosphate Dehydrogenase (G-6-PDH) Antibody, Unconjugated (antibody)

RRID:AB_258454

This unknown targets Glucose-6-Phosphate Dehydrogenase (G-6-PDH)

View all literature mentions

Anti-Ubiquitin Antibody (P4D1) (antibody)

RRID:AB_628423

This monoclonal targets Ubiquitin

View all literature mentions

Proteasome 19S Rpt5/S6a subunit, pAb (antibody)

RRID:AB_10555018

This polyclonal targets Proteasome 19S Rpt5/S6a subunit pAb

View all literature mentions

Proteasome 19S Rpt2/S4 (mts2) subunit, pAb (antibody)

RRID:AB_10541229

This polyclonal targets Proteasome 19S Rpt2/S4 (mts2) subunit pAb

View all literature mentions

Proteasome 19S Rpt5/S6a subunit, pAb (antibody)

RRID:AB_10555018

This polyclonal targets Proteasome 19S Rpt5/S6a subunit pAb

View all literature mentions

Proteasome 19S Rpt2/S4 (mts2) subunit, pAb (antibody)

RRID:AB_10541229

This polyclonal targets Proteasome 19S Rpt2/S4 (mts2) subunit pAb

View all literature mentions