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Functional Genome-wide Screen Identifies Pathways Restricting Central Nervous System Axonal Regeneration.

Cell reports | 2018

Axonal regrowth is crucial for recovery from CNS injury but is severely restricted in adult mammals. We used a genome-wide loss-of-function screen for factors limiting axonal regeneration from cerebral cortical neurons in vitro. Knockdown of 16,007 individual genes identified 580 significant phenotypes. These molecules share no significant overlap with those suggested by previous expression profiles. There is enrichment for genes in pathways related to transport, receptor binding, and cytokine signaling, including Socs4 and Ship2. Among transport-regulating proteins, Rab GTPases are prominent. In vivo assessment with C. elegans validates a cell-autonomous restriction of regeneration by Rab27. Mice lacking Rab27b show enhanced retinal ganglion cell axon regeneration after optic nerve crush and greater motor function and raphespinal sprouting after spinal cord trauma. Thus, a comprehensive functional screen reveals multiple pathways restricting axonal regeneration and neurological recovery after injury.

Pubmed ID: 29642001 RIS Download

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Associated grants

  • Agency: NEI NIH HHS, United States
    Id: P30 EY026878
  • Agency: NIGMS NIH HHS, United States
    Id: T32 GM007223
  • Agency: NIA NIH HHS, United States
    Id: P50 AG047270
  • Agency: NEI NIH HHS, United States
    Id: U01 EY027256
  • Agency: NINDS NIH HHS, United States
    Id: R01 NS094219
  • Agency: NINDS NIH HHS, United States
    Id: R35 NS097283
  • Agency: NINDS NIH HHS, United States
    Id: R01 NS098817
  • Agency: NINDS NIH HHS, United States
    Id: R33 NS079306

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GraphPad Prism (tool)

RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

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