Searching across hundreds of databases

Our searching services are busy right now. Your search will reload in five seconds.

X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

ORY-1001, a Potent and Selective Covalent KDM1A Inhibitor, for the Treatment of Acute Leukemia.

Cancer cell | 2018

The lysine-specific demethylase KDM1A is a key regulator of stem cell potential in acute myeloid leukemia (AML). ORY-1001 is a highly potent and selective KDM1A inhibitor that induces H3K4me2 accumulation on KDM1A target genes, blast differentiation, and reduction of leukemic stem cell capacity in AML. ORY-1001 exhibits potent synergy with standard-of-care drugs and selective epigenetic inhibitors, reduces growth of an AML xenograft model, and extends survival in a mouse PDX (patient-derived xenograft) model of T cell acute leukemia. Surrogate pharmacodynamic biomarkers developed based on expression changes in leukemia cell lines were translated to samples from patients treated with ORY-1001. ORY-1001 is a selective KDM1A inhibitor in clinical trials and is currently being evaluated in patients with leukemia and solid tumors.

Pubmed ID: 29502954 RIS Download

Research resources used in this publication

Additional research tools detected in this publication

Associated grants

  • Agency: Cancer Research UK, United Kingdom
    Id: C5759/A20971

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

This is a list of tools and resources that we have found mentioned in this publication.


Agilent Technologies (tool)

RRID:SCR_013575

Company provides laboratories worldwide with analytical instruments and supplies, clinical and diagnostic testing services, consumables, applications and expertise in life sciences and applied chemical markets.

View all literature mentions

KDM1 / LSD1 antibody [LSD1-12] (antibody)

RRID:AB_881155

This monoclonal targets KDM1 / LSD1

View all literature mentions

LSD1 (C69G12) Rabbit mAb (antibody)

RRID:AB_2070132

This monoclonal targets LSD1

View all literature mentions

Anti-Histone H3, dimethyl (Lys4) Antibody, Unconjugated (antibody)

RRID:AB_915839

This unknown targets Histone H3, dimethyl (Lys4)

View all literature mentions

CoREST antibody (antibody)

RRID:AB_879749

This polyclonal targets Human CoREST

View all literature mentions

GFI1 antibody (antibody)

RRID:AB_732555

This polyclonal targets Human GFI1

View all literature mentions

Gfi-1 (N-20) (antibody)

RRID:AB_2247536

This polyclonal targets GFI1

View all literature mentions

CD11b (antibody)

RRID:AB_394775

This monoclonal targets CD11b

View all literature mentions

MOLT-4 (cell line)

RRID:CVCL_0013

Cell line MOLT-4 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

Strelka (software resource)

RRID:SCR_005109

Software for somatic single nucleotide variant (SNV) and small indel detection from sequencing data of matched tumor-normal samples. The method employs a novel Bayesian approach which represents continuous allele frequencies for both tumor and normal samples, whilst leveraging the expected genotype structure of the normal. This is achieved by representing the normal sample as a mixture of germline variation with noise, and representing the tumor sample as a mixture of the normal sample with somatic variation. A natural consequence of the model structure is that sensitivity can be maintained at high tumor impurity without requiring purity estimates. The method has superior accuracy and sensitivity on impure samples compared to approaches based on either diploid genotype likelihoods or general allele-frequency tests.

View all literature mentions

GraphPad Prism (software resource)

RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

View all literature mentions

RS4;11 (cell line)

RRID:CVCL_0093

Cell line RS4;11 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

BDCM (cell line)

RRID:CVCL_4613

Cell line BDCM is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

MV4-11 (cell line)

RRID:CVCL_0064

Cell line MV4-11 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

KG-1a (cell line)

RRID:CVCL_1824

Cell line KG-1a is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

Pindel (software resource)

RRID:SCR_000560

Software to detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

View all literature mentions

SUP-T1 (cell line)

RRID:CVCL_1714

Cell line SUP-T1 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

CCRF-CEM (cell line)

RRID:CVCL_0207

Cell line CCRF-CEM is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

NB4 (cell line)

RRID:CVCL_0005

Cell line NB4 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

8E5(CEM) (cell line)

RRID:CVCL_3484

Cell line 8E5(CEM) is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

ARH-77 (cell line)

RRID:CVCL_1072

Cell line ARH-77 is a Transformed cell line with a species of origin Homo sapiens (Human)

View all literature mentions

MACS (software resource)

RRID:SCR_013291

Software Python package for identifying transcript factor binding sites. Used to evaluate significance of enriched ChIP regions. Improves spatial resolution of binding sites through combining information of both sequencing tag position and orientation. Can be used for ChIP-Seq data alone, or with control sample with increase of specificity.

View all literature mentions

K-562 (cell line)

RRID:CVCL_0004

Cell line K-562 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

KG-1 (cell line)

RRID:CVCL_0374

Cell line KG-1 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

MOLM-13 (cell line)

RRID:CVCL_2119

Cell line MOLM-13 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

CCRF-HSB-2 (cell line)

RRID:CVCL_1859

Cell line CCRF-HSB-2 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

Ku812E (cell line)

RRID:CVCL_0615

Cell line Ku812E is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

MEG-01 (cell line)

RRID:CVCL_0425

Cell line MEG-01 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

Integrative Genomics Viewer (software resource)

RRID:SCR_011793

A high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

View all literature mentions

KOPN-8 (cell line)

RRID:CVCL_1866

Cell line KOPN-8 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

KE-37 (cell line)

RRID:CVCL_1327

Cell line KE-37 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

JVM-2 (cell line)

RRID:CVCL_1319

Cell line JVM-2 is a Transformed cell line with a species of origin Homo sapiens (Human)

View all literature mentions

LoFreq (software resource)

RRID:SCR_013054

A fast and sensitive variant-caller for inferring single-nucleotide variants (SNVs) from high-throughput sequencing data.

View all literature mentions

THP-1 (cell line)

RRID:CVCL_0006

Cell line THP-1 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

GATK (software resource)

RRID:SCR_001876

A software package to analyze next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. This software library makes writing efficient analysis tools using next-generation sequencing data very easy, and second it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner. (entry from Genetic Analysis Software)

View all literature mentions

HL-60 (cell line)

RRID:CVCL_0002

Cell line HL-60 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

Picard (software toolkit)

RRID:SCR_006525

Java toolset for working with next generation sequencing data in the BAM format.

View all literature mentions

P116 (cell line)

RRID:CVCL_6429

Cell line P116 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

STRING (data or information resource)

RRID:SCR_005223

Database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations and are derived from four sources: Genomic Context, High-throughput experiments, (Conserved) Coexpression, and previous knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. The database currently covers 5''214''234 proteins from 1133 organisms. (2013)

View all literature mentions

BWA (software resource)

RRID:SCR_010910

Software for aligning sequencing reads against large reference genome. Consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. First for sequence reads up to 100bp, and other two for longer sequences ranged from 70bp to 1Mbp.

View all literature mentions

Mono-Mac-1 (cell line)

RRID:CVCL_1425

Cell line Mono-Mac-1 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

MEG-01 (cell line)

RRID:CVCL_0425

Cell line MEG-01 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

KE-37 (cell line)

RRID:CVCL_1327

Cell line KE-37 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

RS4;11 (cell line)

RRID:CVCL_0093

Cell line RS4;11 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

Ku812E (cell line)

RRID:CVCL_0615

Cell line Ku812E is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

P116 (cell line)

RRID:CVCL_6429

Cell line P116 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

BDCM (cell line)

RRID:CVCL_4613

Cell line BDCM is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

8E5(CEM) (cell line)

RRID:CVCL_3484

Cell line 8E5(CEM) is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

ARH-77 (cell line)

RRID:CVCL_1072

Cell line ARH-77 is a Transformed cell line with a species of origin Homo sapiens (Human)

View all literature mentions

JVM-2 (cell line)

RRID:CVCL_1319

Cell line JVM-2 is a Transformed cell line with a species of origin Homo sapiens (Human)

View all literature mentions

KOPN-8 (cell line)

RRID:CVCL_1866

Cell line KOPN-8 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

K-562 (cell line)

RRID:CVCL_0004

Cell line K-562 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

MOLT-4 (cell line)

RRID:CVCL_0013

Cell line MOLT-4 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

CCRF-CEM (cell line)

RRID:CVCL_0207

Cell line CCRF-CEM is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

SUP-T1 (cell line)

RRID:CVCL_1714

Cell line SUP-T1 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

Mono-Mac-1 (cell line)

RRID:CVCL_1425

Cell line Mono-Mac-1 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

KG-1a (cell line)

RRID:CVCL_1824

Cell line KG-1a is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

CCRF-HSB-2 (cell line)

RRID:CVCL_1859

Cell line CCRF-HSB-2 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

HL-60 (cell line)

RRID:CVCL_0002

Cell line HL-60 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

KG-1 (cell line)

RRID:CVCL_0374

Cell line KG-1 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

NB4 (cell line)

RRID:CVCL_0005

Cell line NB4 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

THP-1 (cell line)

RRID:CVCL_0006

Cell line THP-1 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

MOLM-13 (cell line)

RRID:CVCL_2119

Cell line MOLM-13 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

MV4-11 (cell line)

RRID:CVCL_0064

Cell line MV4-11 is a Cancer cell line with a species of origin Homo sapiens (Human)

View all literature mentions

Integrative Genomics Viewer (software resource)

RRID:SCR_011793

A high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

View all literature mentions

BWA (software resource)

RRID:SCR_010910

Software for aligning sequencing reads against large reference genome. Consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. First for sequence reads up to 100bp, and other two for longer sequences ranged from 70bp to 1Mbp.

View all literature mentions

MACS (software resource)

RRID:SCR_013291

Software Python package for identifying transcript factor binding sites. Used to evaluate significance of enriched ChIP regions. Improves spatial resolution of binding sites through combining information of both sequencing tag position and orientation. Can be used for ChIP-Seq data alone, or with control sample with increase of specificity.

View all literature mentions

Picard (software toolkit)

RRID:SCR_006525

Java toolset for working with next generation sequencing data in the BAM format.

View all literature mentions

GraphPad Prism (software resource)

RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

View all literature mentions

GATK (software resource)

RRID:SCR_001876

A software package to analyze next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. This software library makes writing efficient analysis tools using next-generation sequencing data very easy, and second it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner. (entry from Genetic Analysis Software)

View all literature mentions

STRING (data or information resource)

RRID:SCR_005223

Database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations and are derived from four sources: Genomic Context, High-throughput experiments, (Conserved) Coexpression, and previous knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. The database currently covers 5''214''234 proteins from 1133 organisms. (2013)

View all literature mentions

Strelka (software resource)

RRID:SCR_005109

Software for somatic single nucleotide variant (SNV) and small indel detection from sequencing data of matched tumor-normal samples. The method employs a novel Bayesian approach which represents continuous allele frequencies for both tumor and normal samples, whilst leveraging the expected genotype structure of the normal. This is achieved by representing the normal sample as a mixture of germline variation with noise, and representing the tumor sample as a mixture of the normal sample with somatic variation. A natural consequence of the model structure is that sensitivity can be maintained at high tumor impurity without requiring purity estimates. The method has superior accuracy and sensitivity on impure samples compared to approaches based on either diploid genotype likelihoods or general allele-frequency tests.

View all literature mentions

Pindel (software resource)

RRID:SCR_000560

Software to detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

View all literature mentions

LoFreq (software resource)

RRID:SCR_013054

A fast and sensitive variant-caller for inferring single-nucleotide variants (SNVs) from high-throughput sequencing data.

View all literature mentions