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Integration of Multi-omics Data from Mouse Diversity Panel Highlights Mitochondrial Dysfunction in Non-alcoholic Fatty Liver Disease.

Cell systems | 2018

The etiology of non-alcoholic fatty liver disease (NAFLD), the most common form of chronic liver disease, is poorly understood. To understand the causal mechanisms underlying NAFLD, we conducted a multi-omics, multi-tissue integrative study using the Hybrid Mouse Diversity Panel, consisting of ∼100 strains of mice with various degrees of NAFLD. We identified both tissue-specific biological processes and processes that were shared between adipose and liver tissues. We then used gene network modeling to predict candidate regulatory genes of these NAFLD processes, including Fasn, Thrsp, Pklr, and Chchd6. In vivo knockdown experiments of the candidate genes improved both steatosis and insulin resistance. Further in vitro testing demonstrated that downregulation of both Pklr and Chchd6 lowered mitochondrial respiration and led to a shift toward glycolytic metabolism, thus highlighting mitochondria dysfunction as a key mechanistic driver of NAFLD.

Pubmed ID: 29361464 RIS Download

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Associated grants

  • Agency: NCRR NIH HHS, United States
    Id: S10 RR026744
  • Agency: NHLBI NIH HHS, United States
    Id: P01 HL028481
  • Agency: NHLBI NIH HHS, United States
    Id: T32 HL007895
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK104363
  • Agency: NCATS NIH HHS, United States
    Id: UL1 TR001881
  • Agency: NHLBI NIH HHS, United States
    Id: T32 HL069766

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HEK293 (cell line)

RRID:CVCL_0045

Cell line HEK293 is a Transformed cell line with a species of origin Homo sapiens (Human)

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C57BL/6J (organism)

RRID:IMSR_JAX:000664

Mus musculus with name C57BL/6J from IMSR.

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AML12 (cell line)

RRID:CVCL_0140

Cell line AML12 is a Spontaneously immortalized cell line with a species of origin Mus musculus (Mouse)

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