Searching across hundreds of databases

Our searching services are busy right now. Your search will reload in five seconds.

X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Temporal Layering of Signaling Effectors Drives Chromatin Remodeling during Hair Follicle Stem Cell Lineage Progression.

Cell stem cell | 2018

Tissue regeneration relies on resident stem cells (SCs), whose activity and lineage choices are influenced by the microenvironment. Exploiting the synchronized, cyclical bouts of tissue regeneration in hair follicles (HFs), we investigate how microenvironment dynamics shape the emergence of stem cell lineages. Employing epigenetic and ChIP-seq profiling, we uncover how signal-dependent transcription factors couple spatiotemporal cues to chromatin dynamics, thereby choreographing stem cell lineages. Using enhancer-driven reporters, mutagenesis, and genetics, we show that simultaneous BMP-inhibitory and WNT signals set the stage for lineage choices by establishing chromatin platforms permissive for diversification. Mechanistically, when binding of BMP effector pSMAD1 is relieved, enhancers driving HF-stem cell master regulators are silenced. Concomitantly, multipotent, lineage-fated enhancers silent in HF-stem cells become activated by exchanging WNT effectors TCF3/4 for LEF1. Throughout regeneration, lineage enhancers continue reliance upon LEF1 but then achieve specificity by accommodating additional incoming signaling effectors. Barriers to progenitor plasticity increase when diverse, signal-sensitive transcription factors shape LEF1-regulated enhancer dynamics.

Pubmed ID: 29337183 RIS Download

Associated grants

  • Agency: NIAMS NIH HHS, United States
    Id: R01 AR031737
  • Agency: NIGMS NIH HHS, United States
    Id: T32 GM007739
  • Agency: Howard Hughes Medical Institute, United States

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

This is a list of tools and resources that we have found mentioned in this publication.


Fiji (tool)

RRID:SCR_002285

Software package as distribution of ImageJ and ImageJ2 together with Java, Java3D and plugins organized into coherent menu structure. Used to assist research in life sciences.

View all literature mentions

Bowtie (tool)

RRID:SCR_005476

Software ultrafast memory efficient tool for aligning sequencing reads. Bowtie is short read aligner.

View all literature mentions

MACS (tool)

RRID:SCR_013291

Software Python package for identifying transcript factor binding sites. Used to evaluate significance of enriched ChIP regions. Improves spatial resolution of binding sites through combining information of both sequencing tag position and orientation. Can be used for ChIP-Seq data alone, or with control sample with increase of specificity.

View all literature mentions

DESeq2 (tool)

RRID:SCR_015687

Software package for differential gene expression analysis based on the negative binomial distribution. Used for analyzing RNA-seq data for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates.

View all literature mentions

LEF1 (C12A5) Rabbit mAb (antibody)

RRID:AB_823558

This monoclonal targets LEF1 (C12A5) Rabbit mAb

View all literature mentions

Rabbit TrueBlot: Anti-Rabbit IgG HRP - 18-8816-31 (antibody)

RRID:AB_2610847

This monoclonal targets Rabbit TrueBlot: Anti-Rabbit IgG HRP

View all literature mentions

Biotin anti-mouse CD140a (antibody)

RRID:AB_2043974

This monoclonal targets CD140a

View all literature mentions

Biotin anti-mouse CD31 (antibody)

RRID:AB_312911

This monoclonal targets CD31

View all literature mentions

Biotin anti-mouse CD45 (antibody)

RRID:AB_312969

This monoclonal targets CD45

View all literature mentions

Anti-Mouse CD34 Alexa Fluor® 647 (To Be Discontinued. Refer to NEW Format: eFluor® 660, cat. 50-0341) 100 ug (antibody)

RRID:AB_657739

This unknown targets Mouse CD34 Alexa Fluor® 647 (To Be Discontinued. Refer to NEW Format: eFluor® 660 cat. 50-0341) 100 ug

View all literature mentions

PE Rat Anti-Human CD49f (antibody)

RRID:AB_396079

This monoclonal targets CD49f (Integrin α6 chain)

View all literature mentions

Mouse P-Cadherin Affinity Purified Polyclonal Ab (antibody)

RRID:AB_355581

This polyclonal targets Mouse P-Cadherin Affinity Purified Ab

View all literature mentions

Anti-GFP antibody (antibody)

RRID:AB_300798

This polyclonal targets GFP

View all literature mentions

HOXC13-human (antibody)

RRID:AB_2616459

This unknown targets HOXC13

View all literature mentions

CDP (M-222) (antibody)

RRID:AB_2261231

This polyclonal targets CUX1

View all literature mentions

TCF3 (D15G11) Rabbit mAb (antibody)

RRID:AB_2199136

This monoclonal targets TCF3 (D15G11) Rabbit mAb

View all literature mentions

Phospho-Smad1 (Ser463/465)/ Smad5 (Ser463/465)/ Smad9 (Ser465/467) (D5B10) Rabbit mAb (antibody)

RRID:AB_2493181

This monoclonal targets Phospho-Smad1 (Ser463/465)/ Smad5 (Ser463/465)/ Smad9 (Ser465/467)

View all literature mentions

B6.129P2-Lgr5tm1(cre/ERT2)Cle/J (organism)

RRID:IMSR_JAX:008875

Mus musculus with name B6.129P2-Lgr5tm1(cre/ERT2)Cle/J from IMSR.

View all literature mentions

B6.129X1-Gt(ROSA)26Sortm1(EYFP)Cos/J (organism)

RRID:IMSR_JAX:006148

Mus musculus with name B6.129X1-Gt(ROSA)26Sortm1(EYFP)Cos/J from IMSR.

View all literature mentions

Tcf7tm2Cle/Tcf7tm2Cle (organism)

RRID:MGI:2174760

Allele Detail: Targeted This is a legacy resource.

View all literature mentions

LEF1 (C12A5) Rabbit mAb (antibody)

RRID:AB_823558

This monoclonal targets LEF1 (C12A5) Rabbit mAb

View all literature mentions