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H3.3K27M Cooperates with Trp53 Loss and PDGFRA Gain in Mouse Embryonic Neural Progenitor Cells to Induce Invasive High-Grade Gliomas.

Cancer cell | 2017

Gain-of-function mutations in histone 3 (H3) variants are found in a substantial proportion of pediatric high-grade gliomas (pHGG), often in association with TP53 loss and platelet-derived growth factor receptor alpha (PDGFRA) amplification. Here, we describe a somatic mouse model wherein H3.3K27M and Trp53 loss alone are sufficient for neoplastic transformation if introduced in utero. H3.3K27M-driven lesions are clonal, H3K27me3 depleted, Olig2 positive, highly proliferative, and diffusely spreading, thus recapitulating hallmark molecular and histopathological features of pHGG. Addition of wild-type PDGFRA decreases latency and increases tumor invasion, while ATRX knockdown is associated with more circumscribed tumors. H3.3K27M-tumor cells serially engraft in recipient mice, and preliminary drug screening reveals mutation-specific vulnerabilities. Overall, we provide a faithful H3.3K27M-pHGG model which enables insights into oncohistone pathogenesis and investigation of future therapies.

Pubmed ID: 29107533 RIS Download

Associated grants

  • Agency: Worldwide Cancer Research, United Kingdom
    Id: 13-1083
  • Agency: NCI NIH HHS, United States
    Id: P01 CA196539
  • Agency: Medical Research Council, United Kingdom
    Id: MR/M00094X/1
  • Agency: CIHR, Canada
    Id: MOP 286756
  • Agency: Medical Research Council, United Kingdom
    Id: MC_EX_G0800785

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This is a list of tools and resources that we have found mentioned in this publication.


Bioconductor (tool)

RRID:SCR_006442

Software repository for R packages related to analysis and comprehension of high throughput genomic data. Uses separate set of commands for installation of packages. Software project based on R programming language that provides tools for analysis and comprehension of high throughput genomic data.

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BWA (tool)

RRID:SCR_010910

Software for aligning sequencing reads against large reference genome. Consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. First for sequence reads up to 100bp, and other two for longer sequences ranged from 70bp to 1Mbp.

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Trimmomatic (tool)

RRID:SCR_011848

Software Java pipeline for trimming tasks for Illumina paired end and single ended data. Flexible Trimmer for Illumina Sequence Data. Pair aware preprocessing tool optimized for Illumina next generation sequencing data. Includes several processing steps for read trimming and filtering. Operating systems Unix/Linux, Mac OS, Windows.

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featureCounts (tool)

RRID:SCR_012919

A read summarization program, which counts mapped reads for the genomic features such as genes and exons.

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FastQC (tool)

RRID:SCR_014583

Quality control software that perform checks on raw sequence data coming from high throughput sequencing pipelines. This software also provides a modular set of analyses which can give a quick impression of the quality of the data prior to further analysis.

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DESeq2 (tool)

RRID:SCR_015687

Software package for differential gene expression analysis based on the negative binomial distribution. Used for analyzing RNA-seq data for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates.

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STAR (tool)

RRID:SCR_015899

Software performing alignment of high-throughput RNA-seq data. Aligns RNA-seq reads to reference genome using uncompressed suffix arrays.

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STAR (tool)

RRID:SCR_004463

Software performing alignment of high-throughput RNA-seq data. Aligns RNA-seq reads to reference genome using uncompressed suffix arrays.

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Recombinant Anti-Ki67 antibody [SP6] (antibody)

RRID:AB_302459

This recombinant monoclonal targets Ki67

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Daxx (M-112) (antibody)

RRID:AB_2088784

This polyclonal targets Daxx (M-112)

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CD31 (antibody)

RRID:AB_393571

This monoclonal targets CD31

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Mouse PDGF R alpha Antibody (antibody)

RRID:AB_2236897

This polyclonal targets Mouse PDGF R alpha

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ANTI-OLIG-2 (antibody)

RRID:AB_570666

This polyclonal targets Oligodendrocute transcription factor 2

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H3-celegans (antibody)

RRID:AB_302613

This polyclonal targets H3

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H3K27ac-human (antibody)

RRID:AB_2118291

This polyclonal targets H3K27ac

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Anti-Alivin 1 (Hu) (antibody)

RRID:AB_569354

This unknown targets Human Alivin 1

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H3K27me3-human (antibody)

RRID:AB_2616029

This unknown targets H3K27me3

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GFAP antibody (antibody)

RRID:AB_880202

This polyclonal targets Mouse GFAP

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Human CCL20/MIP-3 alpha MAb (Clone 67310) (antibody)

RRID:AB_2275415

This monoclonal targets Human CCL20/MIP-3 alpha MAb (Clone 67310)

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GAPDH (6C5) (antibody)

RRID:AB_627679

This monoclonal targets GAPDH (6C5)

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p53 Tumor Suppressor Protein (antibody)

RRID:AB_563933

This unknown targets Recombinant mouse p53 protein

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ATRX (H-300) (antibody)

RRID:AB_2061023

This polyclonal targets ATRX

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H3F3A-human (antibody)

RRID:AB_10845793

This polyclonal targets H3F3A

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HA-probe Antibody (Y-11) (antibody)

RRID:AB_631618

This polyclonal targets HA-probe

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HA-Tag Antibody (F-7) (antibody)

RRID:AB_627809

This monoclonal targets HA-Tag

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Anti-GFP antibody (antibody)

RRID:AB_300798

This polyclonal targets GFP

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Recombinant Anti-Ki67 antibody [SP6] (antibody)

RRID:AB_302459

This recombinant monoclonal targets Ki67

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Recombinant Anti-Ki67 antibody [SP6] (antibody)

RRID:AB_302459

This recombinant monoclonal targets Ki67

View all literature mentions