Searching across hundreds of databases

Our searching services are busy right now. Your search will reload in five seconds.

X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Molecular features distinguish ten neuronal types in the mouse superficial superior colliculus.

The Journal of comparative neurology | 2016

The superior colliculus (SC) is a midbrain center involved in controlling head and eye movements in response to inputs from multiple sensory modalities. Visual inputs arise from both the retina and visual cortex and converge onto the superficial layer of the SC (sSC). Neurons in the sSC send information to deeper layers of the SC and to thalamic nuclei that modulate visually guided behaviors. Presently, our understanding of sSC neurons is impeded by a lack of molecular markers that define specific cell types. To better understand the identity and organization of sSC neurons, we took a systematic approach to investigate gene expression within four molecular families: transcription factors, cell adhesion molecules, neuropeptides, and calcium binding proteins. Our analysis revealed 12 molecules with distinct expression patterns in mouse sSC: cadherin 7, contactin 3, netrin G2, cadherin 6, protocadherin 20, retinoid-related orphan receptor β, brain-specific homeobox/POU domain protein 3b, Ets variant gene 1, substance P, somatostatin, vasoactive intestinal polypeptide, and parvalbumin. Double labeling experiments, by either in situ hybridization or immunostaining, demonstrated that the 12 molecular markers collectively define 10 different sSC neuronal types. The characteristic positions of these cell types divide the sSC into four distinct layers. The 12 markers identified here will serve as valuable tools to examine molecular mechanisms that regulate development of sSC neuronal types. These markers could also be used to examine the connections between specific cell types that form retinocollicular, corticocollicular, or colliculothalamic pathways. J. Comp. Neurol. 524:2300-2321, 2016. © 2016 Wiley Periodicals, Inc.

Pubmed ID: 26713509 RIS Download

Research resources used in this publication

Additional research tools detected in this publication

None found

Associated grants

  • Agency: NEI NIH HHS, United States
    Id: P30 EY026878
  • Agency: NEI NIH HHS, United States
    Id: R00 EY019355
  • Agency: NEI NIH HHS, United States
    Id: R01 EY014454

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

This is a list of tools and resources that we have found mentioned in this publication.


Anti-NeuN (antibody)

RRID:AB_2298772

This monoclonal targets NeuN

View all literature mentions

Anti-Choline Acetyltransferase Antibody (antibody)

RRID:AB_2079751

This polyclonal targets Choline Acetyltransferase

View all literature mentions

Brn-3b (H-18) (antibody)

RRID:AB_2167523

This polyclonal targets Brn-3b (H-18)

View all literature mentions

Substance P antibody (antibody)

RRID:AB_1288870

This monoclonal targets Substance P

View all literature mentions

Anti-Green Fluorescent Protein Antibody (antibody)

RRID:AB_10000240

This polyclonal targets Green Fluorescent Protein (GFP)

View all literature mentions

Rabbit anti-parvalbumin (antibody)

RRID:AB_10000344

This polyclonal targets parvalbumin

View all literature mentions

anti-GFP (antibody)

RRID:AB_2630379

This polyclonal targets native GFP from Aequorea victoria

View all literature mentions

Allen Developing Mouse Brain Atlas (atlas)

RRID:SCR_002990

Map of gene expression in developing mouse brain revealing gene expression patterns from embryonic through postnatal stages. Provides information about spatial and temporal regulation of gene expression with database. Feature include seven sagittal reference atlases created with a developmental ontology. These anatomic atlases may be viewed alongside in situ hybridization (ISH) data as well as by itself.

View all literature mentions

ImageJ (software resource)

RRID:SCR_003070

Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

View all literature mentions

Anti-Green Fluorescent Protein Antibody (antibody)

RRID:AB_10000240

This polyclonal targets Green Fluorescent Protein (GFP)

View all literature mentions

Anti-Choline Acetyltransferase Antibody (antibody)

RRID:AB_2079751

This polyclonal targets Choline Acetyltransferase

View all literature mentions

Brn-3b (H-18) (antibody)

RRID:AB_2167523

This polyclonal targets Brn-3b (H-18)

View all literature mentions

Anti-Choline Acetyltransferase Antibody (antibody)

RRID:AB_2079751

This polyclonal targets Choline Acetyltransferase

View all literature mentions

Allen Developing Mouse Brain Atlas (atlas)

RRID:SCR_002990

Map of gene expression in developing mouse brain revealing gene expression patterns from embryonic through postnatal stages. Provides information about spatial and temporal regulation of gene expression with database. Feature include seven sagittal reference atlases created with a developmental ontology. These anatomic atlases may be viewed alongside in situ hybridization (ISH) data as well as by itself.

View all literature mentions

Substance P antibody (antibody)

RRID:AB_1288870

This monoclonal targets Substance P

View all literature mentions

Anti-NeuN (antibody)

RRID:AB_2298772

This monoclonal targets NeuN

View all literature mentions

Rabbit anti-parvalbumin (antibody)

RRID:AB_10000344

This polyclonal targets parvalbumin

View all literature mentions

anti-GFP (antibody)

RRID:AB_2630379

This polyclonal targets native GFP from Aequorea victoria

View all literature mentions

anti-GFP (antibody)

RRID:AB_2630379

This polyclonal targets native GFP from Aequorea victoria

View all literature mentions

ImageJ (software resource)

RRID:SCR_003070

Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

View all literature mentions

Rabbit anti-parvalbumin (antibody)

RRID:AB_10000344

This polyclonal targets parvalbumin

View all literature mentions

Anti-NeuN (antibody)

RRID:AB_2298772

This monoclonal targets NeuN

View all literature mentions

Substance P antibody (antibody)

RRID:AB_1288870

This monoclonal targets Substance P

View all literature mentions

Anti-Green Fluorescent Protein Antibody (antibody)

RRID:AB_10000240

This polyclonal targets Green Fluorescent Protein (GFP)

View all literature mentions

Brn-3b (H-18) (antibody)

RRID:AB_2167523

This polyclonal targets Brn-3b (H-18)

View all literature mentions

ImageJ (software resource)

RRID:SCR_003070

Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

View all literature mentions

Allen Developing Mouse Brain Atlas (atlas)

RRID:SCR_002990

Map of gene expression in developing mouse brain revealing gene expression patterns from embryonic through postnatal stages. Provides information about spatial and temporal regulation of gene expression with database. Feature include seven sagittal reference atlases created with a developmental ontology. These anatomic atlases may be viewed alongside in situ hybridization (ISH) data as well as by itself.

View all literature mentions