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HTSeq--a Python framework to work with high-throughput sequencing data.

Bioinformatics (Oxford, England) | 2015

A large choice of tools exists for many standard tasks in the analysis of high-throughput sequencing (HTS) data. However, once a project deviates from standard workflows, custom scripts are needed.

Pubmed ID: 25260700 RIS Download

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This is a list of tools and resources that we have found mentioned in this publication.


FastQC (tool)

RRID:SCR_014583

Quality control software that perform checks on raw sequence data coming from high throughput sequencing pipelines. This software also provides a modular set of analyses which can give a quick impression of the quality of the data prior to further analysis.

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