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Advances in diffusion MRI acquisition and processing in the Human Connectome Project.

NeuroImage | 2013

The Human Connectome Project (HCP) is a collaborative 5-year effort to map human brain connections and their variability in healthy adults. A consortium of HCP investigators will study a population of 1200 healthy adults using multiple imaging modalities, along with extensive behavioral and genetic data. In this overview, we focus on diffusion MRI (dMRI) and the structural connectivity aspect of the project. We present recent advances in acquisition and processing that allow us to obtain very high-quality in-vivo MRI data, whilst enabling scanning of a very large number of subjects. These advances result from 2 years of intensive efforts in optimising many aspects of data acquisition and processing during the piloting phase of the project. The data quality and methods described here are representative of the datasets and processing pipelines that will be made freely available to the community at quarterly intervals, beginning in 2013.

Pubmed ID: 23702418 RIS Download

Research resources used in this publication

None found

Antibodies used in this publication

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Associated grants

  • Agency: Medical Research Council, United Kingdom
    Id: G0800578
  • Agency: NIMH NIH HHS, United States
    Id: 1U54MH091657-01
  • Agency: Wellcome Trust, United Kingdom
    Id: 098369
  • Agency: NIMH NIH HHS, United States
    Id: R01 MH060974
  • Agency: NINDS NIH HHS, United States
    Id: P30 NS076408
  • Agency: NCRR NIH HHS, United States
    Id: S10 RR022984
  • Agency: NCRR NIH HHS, United States
    Id: 1S10RR022984-01A1
  • Agency: NIMH NIH HHS, United States
    Id: R01 MH60974
  • Agency: Wellcome Trust, United Kingdom
    Id: 090955
  • Agency: NIBIB NIH HHS, United States
    Id: P41 EB015894
  • Agency: NIMH NIH HHS, United States
    Id: F30 MH097312
  • Agency: NIMH NIH HHS, United States
    Id: U54 MH091657
  • Agency: NINDS NIH HHS, United States
    Id: P30 NS057091

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This is a list of tools and resources that we have found mentioned in this publication.


Human Connectome Coordination Facility (tool)

RRID:SCR_008749

Consortium to comprehensively map long-distance brain connections and their variability. It is acquiring data and developing analysis pipelines for several modalities of neuroimaging data plus behavioral and genetic data from healthy adults.

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ADNI - Alzheimer's Disease Neuroimaging Initiative (tool)

RRID:SCR_003007

Database of the results of the ADNI study. ADNI is an initiative to develop biomarker-based methods to detect and track the progression of Alzheimer's disease (AD) that provides access to qualified scientists to their database of imaging, clinical, genomic, and biomarker data.

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NKI-RS Enhanced Sample (tool)

RRID:SCR_010461

Dataset of 1000 characterized community-ascertained participants using state-of-the-art multiband imaging-based resting state fMRI (R-fMRI) and diffusion tensor imaging (DTI), genetics, and a deep phenotyping protocol from a large cross-sectional sample of brain development, maturation and aging (ages 6 - 85 yrs). The Center for Magnetic Resonance Research (CMRR), University of Minnesota, provided the NKI-RS effort with the latest version of the Multiband EPI sequence (Xu et al. 2012) and associated image reconstruction algorithms, enabling the acquisition of state-of-the-art imaging datasets for this large-scale imaging effort. The enhanced NKI-RS expands upon the phenotypic protocol of the original NKI-RS and captures a broad range of behavioral and cognitive phenomenology relevant to psychiatric health and illness. The validity and value of assessments were evaluated by consulting leaders in the field of psychiatric phenotyping.

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