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Resting-state fMRI in the Human Connectome Project.

NeuroImage | 2013

Resting-state functional magnetic resonance imaging (rfMRI) allows one to study functional connectivity in the brain by acquiring fMRI data while subjects lie inactive in the MRI scanner, and taking advantage of the fact that functionally related brain regions spontaneously co-activate. rfMRI is one of the two primary data modalities being acquired for the Human Connectome Project (the other being diffusion MRI). A key objective is to generate a detailed in vivo mapping of functional connectivity in a large cohort of healthy adults (over 1000 subjects), and to make these datasets freely available for use by the neuroimaging community. In each subject we acquire a total of 1h of whole-brain rfMRI data at 3 T, with a spatial resolution of 2×2×2 mm and a temporal resolution of 0.7s, capitalizing on recent developments in slice-accelerated echo-planar imaging. We will also scan a subset of the cohort at higher field strength and resolution. In this paper we outline the work behind, and rationale for, decisions taken regarding the rfMRI data acquisition protocol and pre-processing pipelines, and present some initial results showing data quality and example functional connectivity analyses.

Pubmed ID: 23702415 RIS Download

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Associated grants

  • Agency: NIMH NIH HHS, United States
    Id: 1U54MH091657-01
  • Agency: Wellcome Trust, United Kingdom
    Id: 098369
  • Agency: NIMH NIH HHS, United States
    Id: F30-MH097312
  • Agency: Medical Research Council, United Kingdom
    Id: MR/K006673/1
  • Agency: NIMH NIH HHS, United States
    Id: F30 MH100872
  • Agency: NINDS NIH HHS, United States
    Id: P30 NS076408
  • Agency: NIBIB NIH HHS, United States
    Id: P41-RR08079/EB015894
  • Agency: NIBIB NIH HHS, United States
    Id: P41 EB015894
  • Agency: NIMH NIH HHS, United States
    Id: F30 MH097312
  • Agency: NCRR NIH HHS, United States
    Id: P41 RR008079
  • Agency: NINDS NIH HHS, United States
    Id: P30-NS057091
  • Agency: NIMH NIH HHS, United States
    Id: U54 MH091657
  • Agency: NINDS NIH HHS, United States
    Id: P30 NS057091

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Human Connectome Coordination Facility (tool)

RRID:SCR_008749

Consortium to comprehensively map long-distance brain connections and their variability. It is acquiring data and developing analysis pipelines for several modalities of neuroimaging data plus behavioral and genetic data from healthy adults.

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