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Ensembl 2013.

Paul Flicek | Ikhlak Ahmed | M Ridwan Amode | Daniel Barrell | Kathryn Beal | Simon Brent | Denise Carvalho-Silva | Peter Clapham | Guy Coates | Susan Fairley | Stephen Fitzgerald | Laurent Gil | Carlos García-Girón | Leo Gordon | Thibaut Hourlier | Sarah Hunt | Thomas Juettemann | Andreas K Kähäri | Stephen Keenan | Monika Komorowska | Eugene Kulesha | Ian Longden | Thomas Maurel | William M McLaren | Matthieu Muffato | Rishi Nag | Bert Overduin | Miguel Pignatelli | Bethan Pritchard | Emily Pritchard | Harpreet Singh Riat | Graham R S Ritchie | Magali Ruffier | Michael Schuster | Daniel Sheppard | Daniel Sobral | Kieron Taylor | Anja Thormann | Stephen Trevanion | Simon White | Steven P Wilder | Bronwen L Aken | Ewan Birney | Fiona Cunningham | Ian Dunham | Jennifer Harrow | Javier Herrero | Tim J P Hubbard | Nathan Johnson | Rhoda Kinsella | Anne Parker | Giulietta Spudich | Andy Yates | Amonida Zadissa | Stephen M J Searle
Nucleic acids research | 2013

The Ensembl project (http://www.ensembl.org) provides genome information for sequenced chordate genomes with a particular focus on human, mouse, zebrafish and rat. Our resources include evidenced-based gene sets for all supported species; large-scale whole genome multiple species alignments across vertebrates and clade-specific alignments for eutherian mammals, primates, birds and fish; variation data resources for 17 species and regulation annotations based on ENCODE and other data sets. Ensembl data are accessible through the genome browser at http://www.ensembl.org and through other tools and programmatic interfaces.

Pubmed ID: 23203987 RIS Download

Research resources used in this publication

None found

Additional research tools detected in this publication

Antibodies used in this publication

None found

Associated grants

  • Agency: NHGRI NIH HHS, United States
    Id: U01HG004695
  • Agency: Wellcome Trust, United Kingdom
    Id: WT079643
  • Agency: Wellcome Trust, United Kingdom
    Id: 095908
  • Agency: Wellcome Trust, United Kingdom
    Id: WT062023
  • Agency: Biotechnology and Biological Sciences Research Council, United Kingdom
    Id: BB/E011640/1
  • Agency: Biotechnology and Biological Sciences Research Council, United Kingdom
    Id: BB/I025506/1
  • Agency: NHGRI NIH HHS, United States
    Id: U54 HG004555
  • Agency: NHGRI NIH HHS, United States
    Id: U41HG006104
  • Agency: NHGRI NIH HHS, United States
    Id: U54HG004563

Publication data is provided by the National Library of Medicine ® and PubMed ®. Data is retrieved from PubMed ® on a weekly schedule. For terms and conditions see the National Library of Medicine Terms and Conditions.

This is a list of tools and resources that we have found mentioned in this publication.


Ensembl (tool)

RRID:SCR_002344

Collection of genome databases for vertebrates and other eukaryotic species with DNA and protein sequence search capabilities. Used to automatically annotate genome, integrate this annotation with other available biological data and make data publicly available via web. Ensembl tools include BLAST, BLAT, BioMart and the Variant Effect Predictor (VEP) for all supported species.

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European Bioinformatics Institute (tool)

RRID:SCR_004727

Non-profit academic organization for research and services in bioinformatics. Provides freely available data from life science experiments, performs basic research in computational biology, and offers user training programme, manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures. Part of EMBL.

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