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A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.

BMC medical genomics | 2012

Transcriptomic studies in clinical research are essential tools for deciphering the functional elements of the genome and unraveling underlying disease mechanisms. Various technologies have been developed to deduce and quantify the transcriptome including hybridization and sequencing-based approaches. Recently, high density exon microarrays have been successfully employed for detecting differentially expressed genes and alternative splicing events for biomarker discovery and disease diagnostics. The field of transcriptomics is currently being revolutionized by high throughput DNA sequencing methodologies to map, characterize, and quantify the transcriptome.

Pubmed ID: 22747986 RIS Download

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Associated grants

  • Agency: Intramural NIH HHS, United States
    Id: ZIA HL006013-04
  • Agency: NHLBI NIH HHS, United States
    Id: 1 ZIA HL006013-03

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Illumina (tool)

RRID:SCR_010233

American company incorporated that develops, manufactures and markets integrated systems for the analysis of genetic variation and biological function. Provides a line of products and services that serve the sequencing, genotyping and gene expression and proteomics markets. Its headquarters are located in San Diego, California.

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DNAnexus (tool)

RRID:SCR_011884

A cloud-based platform to support genomics at your organization.

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