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Systematic analysis of tissue-restricted miRISCs reveals a broad role for microRNAs in suppressing basal activity of the C. elegans pathogen response.

Gene regulation by microRNAs (miRNAs) under specific physiological conditions often involves complex interactions between multiple miRNAs and a large number of their targets, as well as coordination with other regulatory mechanisms, limiting the effectiveness of classical genetic methods to identify miRNA functions. We took a systematic approach to analyze the miRNA-induced silencing complex (miRISC) in individual tissues of C. elegans and found that mRNAs encoded by pathogen-responsive genes were dramatically overrepresented in the intestinal miRISC, and that multiple miRNAs accumulated in the intestinal miRISCs upon infection. Inactivation of the miRISC or ablation of miRNAs from multiple families resulted in overexpression of several pathogen-responsive genes under basal conditions and, surprisingly, enhanced worm survival on pathogenic Pseudomonas aeruginosa. These results indicate that much of the miRNA activity in the gut is dedicated to attenuating the activity of the pathogen-response system, uncovering a complex physiological function of the miRNA network.

Pubmed ID: 22503424


  • Kudlow BA
  • Zhang L
  • Han M


Molecular cell

Publication Data

May 25, 2012

Associated Grants

  • Agency: NIGMS NIH HHS, Id: F32-GM087902
  • Agency: NCI NIH HHS, Id: P30 CA046934
  • Agency: NIGMS NIH HHS, Id: R01 GM047869
  • Agency: NIGMS NIH HHS, Id: R01 GM047869-19
  • Agency: NIGMS NIH HHS, Id: R01-GM47869
  • Agency: Howard Hughes Medical Institute, Id:

Mesh Terms

  • Animals
  • Animals, Genetically Modified
  • Caenorhabditis elegans
  • Caenorhabditis elegans Proteins
  • Carrier Proteins
  • Gene Expression Regulation
  • Genes, Helminth
  • Host-Pathogen Interactions
  • Intestines
  • MicroRNAs
  • Muscles
  • Pseudomonas aeruginosa
  • RNA, Helminth
  • RNA, Messenger
  • RNA-Induced Silencing Complex
  • Signal Transduction