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Extending KNIME for next-generation sequencing data analysis.

SUMMARY: KNIME (Konstanz Information Miner) is a user-friendly and comprehensive open-source data integration, processing, analysis and exploration platform. We present here new functionality and workflows that open the door to performing next-generation sequencing analysis using the KNIME framework. AVAILABILITY: All sources and compiled code are available via the KNIME update mechanism. Example workflows and descriptions are available through http://tech.knime.org/community/next-generation-sequencing. CONTACT: bernd.jagla@pasteur.fr SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Pubmed ID: 21873641


  • Jagla B
  • Wiswedel B
  • CoppĂ©e JY


Bioinformatics (Oxford, England)

Publication Data

October 15, 2011

Associated Grants


Mesh Terms

  • High-Throughput Nucleotide Sequencing
  • Software
  • Workflow