Extending KNIME for next-generation sequencing data analysis.
SUMMARY: KNIME (Konstanz Information Miner) is a user-friendly and comprehensive open-source data integration, processing, analysis and exploration platform. We present here new functionality and workflows that open the door to performing next-generation sequencing analysis using the KNIME framework. AVAILABILITY: All sources and compiled code are available via the KNIME update mechanism. Example workflows and descriptions are available through http://tech.knime.org/community/next-generation-sequencing. CONTACT: firstname.lastname@example.org SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Pubmed ID: 21873641
- Jagla B
- Wiswedel B
- Coppée JY
Bioinformatics (Oxford, England)
October 15, 2011
- High-Throughput Nucleotide Sequencing