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Extending KNIME for next-generation sequencing data analysis.

http://www.ncbi.nlm.nih.gov/pubmed/21873641

SUMMARY: KNIME (Konstanz Information Miner) is a user-friendly and comprehensive open-source data integration, processing, analysis and exploration platform. We present here new functionality and workflows that open the door to performing next-generation sequencing analysis using the KNIME framework. AVAILABILITY: All sources and compiled code are available via the KNIME update mechanism. Example workflows and descriptions are available through http://tech.knime.org/community/next-generation-sequencing. CONTACT: bernd.jagla@pasteur.fr SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Pubmed ID: 21873641 RIS Download

Mesh terms: High-Throughput Nucleotide Sequencing | Software | Workflow