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The GUDMAP database--an online resource for genitourinary research.

The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is an international consortium working to generate gene expression data and transgenic mice. GUDMAP includes data from large-scale in situ hybridisation screens (wholemount and section) and microarray gene expression data of microdissected, laser-captured and FACS-sorted components of the developing mouse genitourinary (GU) system. These expression data are annotated using a high-resolution anatomy ontology specific to the developing murine GU system. GUDMAP data are freely accessible at www.gudmap.org via easy-to-use interfaces. This curated, high-resolution dataset serves as a powerful resource for biologists, clinicians and bioinformaticians interested in the developing urogenital system. This paper gives examples of how the data have been used to address problems in developmental biology and provides a primer for those wishing to use the database in their own research.

Pubmed ID: 21652655

Authors

  • Harding SD
  • Armit C
  • Armstrong J
  • Brennan J
  • Cheng Y
  • Haggarty B
  • Houghton D
  • Lloyd-MacGilp S
  • Pi X
  • Roochun Y
  • Sharghi M
  • Tindal C
  • McMahon AP
  • Gottesman B
  • Little MH
  • Georgas K
  • Aronow BJ
  • Potter SS
  • Brunskill EW
  • Southard-Smith EM
  • Mendelsohn C
  • Baldock RA
  • Davies JA
  • Davidson D

Journal

Development (Cambridge, England)

Publication Data

July 9, 2011

Associated Grants

  • Agency: NIDDK NIH HHS, Id: DK070136
  • Agency: NIDDK NIH HHS, Id: DK070181
  • Agency: NIDDK NIH HHS, Id: DK070200
  • Agency: Medical Research Council, Id: MC_U127527203
  • Agency: NIDDK NIH HHS, Id: R01 DK061459
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-01A1
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-01A1S1
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-02
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-03
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-04
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-05
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-06
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-07
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-07S1
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-08
  • Agency: NIDDK NIH HHS, Id: R01 DK061459-09
  • Agency: NIDDK NIH HHS, Id: R56 DK082963
  • Agency: NIDDK NIH HHS, Id: R56 DK082963-01

Mesh Terms

  • Animals
  • Databases, Genetic
  • Humans
  • Internet
  • Mice
  • Software
  • Urogenital System