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GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.

The GeneMANIA Cytoscape plugin brings fast gene function prediction capabilities to the desktop. GeneMANIA identifies the most related genes to a query gene set using a guilt-by-association approach. The plugin uses over 800 networks from six organisms and each related gene is traceable to the source network used to make the prediction. Users may add their own interaction networks and expression profile data to complement or override the default data. AVAILABILITY AND IMPLEMENTATION: The GeneMANIA Cytoscape plugin is implemented in Java and is freely available at http://www.genemania.org/plugin/.

Pubmed ID: 20926419


  • Montojo J
  • Zuberi K
  • Rodriguez H
  • Kazi F
  • Wright G
  • Donaldson SL
  • Morris Q
  • Bader GD


Bioinformatics (Oxford, England)

Publication Data

November 15, 2010

Associated Grants


Mesh Terms

  • Algorithms
  • Computational Biology
  • Databases, Factual
  • Gene Regulatory Networks
  • Genes
  • Software