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ENCODE whole-genome data in the UCSC Genome Browser.

The Encyclopedia of DNA Elements (ENCODE) project is an international consortium of investigators funded to analyze the human genome with the goal of producing a comprehensive catalog of functional elements. The ENCODE Data Coordination Center at The University of California, Santa Cruz (UCSC) is the primary repository for experimental results generated by ENCODE investigators. These results are captured in the UCSC Genome Bioinformatics database and download server for visualization and data mining via the UCSC Genome Browser and companion tools (Rhead et al. The UCSC Genome Browser Database: update 2010, in this issue). The ENCODE web portal at UCSC ( or provides information about the ENCODE data and convenient links for access.

Pubmed ID: 19920125


  • Rosenbloom KR
  • Dreszer TR
  • Pheasant M
  • Barber GP
  • Meyer LR
  • Pohl A
  • Raney BJ
  • Wang T
  • Hinrichs AS
  • Zweig AS
  • Fujita PA
  • Learned K
  • Rhead B
  • Smith KE
  • Kuhn RM
  • Karolchik D
  • Haussler D
  • Kent WJ


Nucleic acids research

Publication Data

January 22, 2010

Associated Grants

  • Agency: NHGRI NIH HHS, Id: 5U41HG004568-02
  • Agency: NHGRI NIH HHS, Id: P41HG002371-09
  • Agency: NHGRI NIH HHS, Id: U54 HG004555
  • Agency: Howard Hughes Medical Institute, Id:

Mesh Terms

  • Animals
  • Cell Line, Tumor
  • Computational Biology
  • Databases, Genetic
  • Databases, Nucleic Acid
  • Genome, Human
  • Genomics
  • Humans
  • Information Storage and Retrieval
  • Internet
  • Mice
  • Sequence Alignment
  • Software