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New tools at the Candida Genome Database: biochemical pathways and full-text literature search.

The Candida Genome Database (CGD, http://www.candidagenome.org/) provides online access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. Herein, we describe two recently added features, Candida Biochemical Pathways and the Textpresso full-text literature search tool. The Biochemical Pathways tool provides visualization of metabolic pathways and analysis tools that facilitate interpretation of experimental data, including results of large-scale experiments, in the context of Candida metabolism. Textpresso for Candida allows searching through the full-text of Candida-specific literature, including clinical and epidemiological studies.

Pubmed ID: 19808938

Authors

  • Skrzypek MS
  • Arnaud MB
  • Costanzo MC
  • Inglis DO
  • Shah P
  • Binkley G
  • Miyasato SR
  • Sherlock G

Journal

Nucleic acids research

Publication Data

January 22, 2010

Associated Grants

  • Agency: NIDCR NIH HHS, Id: R01 DE015873
  • Agency: NIDCR NIH HHS, Id: R01 DE015873
  • Agency: NIDCR NIH HHS, Id: R01DE015873

Mesh Terms

  • Candida albicans
  • Computational Biology
  • DNA, Fungal
  • Databases, Genetic
  • Databases, Nucleic Acid
  • Databases, Protein
  • Genes, Fungal
  • Genome, Fungal
  • Information Storage and Retrieval
  • Internet
  • Open Reading Frames
  • Protein Structure, Tertiary
  • Software
  • User-Computer Interface