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Intron 7 conserved sequence elements regulate the splicing of the SMN genes.

Human genetics | Dec 8, 2009

Proximal spinal muscular atrophy (SMA) is a neuromuscular disease caused by low levels of the survival motor neuron (SMN) protein. In humans there are two nearly identical SMN genes, SMN1 and SMN2. The SMN2 gene generates a truncated protein, due to a C to T nucleotide alteration in exon 7, which leads to inefficient RNA splicing of exon 7. This exclusion of SMN exon 7 is central to the onset of the SMA disease. Exon 7 splicing is regulated by a number of exonic and intronic splicing regulatory sequences and the trans-factors that bind them. Here, we identify conserved intronic sequences in the SMN genes. Five regions were examined due to conservation and their proximity to exons 6 through 8. Using mutagenesis two conserved elements located in intron 7 of the SMN genes that affect exon 7 splicing have been identified. Additional analysis of one of these regions showed decreased inclusion of exon 7 in SMN transcripts when deletions or mutations were introduced. Furthermore, multimerization of this conserved region was capable of restoring correct SMN splicing. Together these results describe a novel intronic splicing enhancer sequence located in the final intron of the SMN genes. This discovery provides insight into the splicing of the SMN genes using conserved intonic sequence as a tool to uncover regions of importance in pre-messenger RNA splicing. A better understanding of the way SMN premRNA is spliced can lead to the development of new therapies.

Pubmed ID: 19701774 RIS Download

Mesh terms: Base Sequence | Cells, Cultured | Conserved Sequence | Humans | Introns | Molecular Sequence Data | RNA Splicing | SMN Complex Proteins | Sequence Alignment

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Associated grants

  • Agency: NINDS NIH HHS, Id: R21 NS054690-01A2
  • Agency: NINDS NIH HHS, Id: R21 NS054690-02
  • Agency: NINDS NIH HHS, Id: R21 NS054690
  • Agency: NIGMS NIH HHS, Id: 1F31GM080151-01A1
  • Agency: NIGMS NIH HHS, Id: F31 GM080151
  • Agency: NINDS NIH HHS, Id: 1R21NS054690
  • Agency: NIGMS NIH HHS, Id: F31 GM080151-03

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