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Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN).

PloS one | 2009

Customized zinc finger nucleases (ZFNs) form the basis of a broadly applicable tool for highly efficient genome modification. ZFNs are artificial restriction endonucleases consisting of a non-specific nuclease domain fused to a zinc finger array which can be engineered to recognize specific DNA sequences of interest. Recent proof-of-principle experiments have shown that targeted knockout mutations can be efficiently generated in endogenous zebrafish genes via non-homologous end-joining-mediated repair of ZFN-induced DNA double-stranded breaks. The Zinc Finger Consortium, a group of academic laboratories committed to the development of engineered zinc finger technology, recently described the first rapid, highly effective, and publicly available method for engineering zinc finger arrays. The Consortium has previously used this new method (known as OPEN for Oligomerized Pool ENgineering) to generate high quality ZFN pairs that function in human and plant cells.

Pubmed ID: 19198653 RIS Download

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Associated grants

  • Agency: NIGMS NIH HHS, United States
    Id: R33-GM066387
  • Agency: NHLBI NIH HHS, United States
    Id: R01 HL79267
  • Agency: NIGMS NIH HHS, United States
    Id: R21 GM066387
  • Agency: NIGMS NIH HHS, United States
    Id: R33 GM066387-04
  • Agency: NIA NIH HHS, United States
    Id: K01 AG031300
  • Agency: NIGMS NIH HHS, United States
    Id: R33 GM066387
  • Agency: NHLBI NIH HHS, United States
    Id: R01 HL079267
  • Agency: NIH HHS, United States
    Id: DP1 OD006862
  • Agency: NHLBI NIH HHS, United States
    Id: R21 HL091808
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM069906

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Ensembl (tool)

RRID:SCR_002344

Collection of genome databases for vertebrates and other eukaryotic species with DNA and protein sequence search capabilities. Used to automatically annotate genome, integrate this annotation with other available biological data and make data publicly available via web. Ensembl tools include BLAST, BLAT, BioMart and the Variant Effect Predictor (VEP) for all supported species.

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