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Zebrafish mutants calamity and catastrophe define critical pathways of gene-nutrient interactions in developmental copper metabolism.

PLoS genetics | 2008

Nutrient availability is an important environmental variable during development that has significant effects on the metabolism, health, and viability of an organism. To understand these interactions for the nutrient copper, we used a chemical genetic screen for zebrafish mutants sensitive to developmental copper deficiency. In this screen, we isolated two mutants that define subtleties of copper metabolism. The first contains a viable hypomorphic allele of atp7a and results in a loss of pigmentation when exposed to mild nutritional copper deficiency. This mutant displays incompletely penetrant skeletal defects affected by developmental copper availability. The second carries an inactivating mutation in the vacuolar ATPase that causes punctate melanocytes and embryonic lethality. This mutant, catastrophe, is sensitive to copper deprivation revealing overlap between ion metabolic pathways. Together, the two mutants illustrate the utility of chemical genetic screens in zebrafish to elucidate the interaction of nutrient availability and genetic polymorphisms in cellular metabolism.

Pubmed ID: 19008952 RIS Download

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Associated grants

  • Agency: NIGMS NIH HHS, United States
    Id: T32 GM07200
  • Agency: NIGMS NIH HHS, United States
    Id: T32 GM007200
  • Agency: NIDDK NIH HHS, United States
    Id: DK61763
  • Agency: NIDDK NIH HHS, United States
    Id: DK44464
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK061763
  • Agency: NIDDK NIH HHS, United States
    Id: R01 DK044464
  • Agency: NIDDK NIH HHS, United States
    Id: R37 DK044464

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SoftBerry (tool)

RRID:SCR_000902

Developer of software tools for genomic research focused on computational methods of high throughput biomedical data analysis, including software to support next generation sequencing technologies, transcriptome analysis with RNASeq data, SNP detection and selection of disease specific SNP subsets. Provides custom genome annotation services.

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Ensembl (tool)

RRID:SCR_002344

Collection of genome databases for vertebrates and other eukaryotic species with DNA and protein sequence search capabilities. Used to automatically annotate genome, integrate this annotation with other available biological data and make data publicly available via web. Ensembl tools include BLAST, BLAT, BioMart and the Variant Effect Predictor (VEP) for all supported species.

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Zebrafish Genome Project (tool)

RRID:SCR_013157

Database of zebrafish genome.

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