Minimotif miner 2nd release: a database and web system for motif search.
Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample analysis of prion shows how MnM 2 can be used. Weblink: http://mnm.engr.uconn.edu, weblink for version 1 is http://sms.engr.uconn.edu.
Pubmed ID: 18978024 RIS Download
Amino Acid Motifs | Databases, Protein | Internet | Polymorphism, Single Nucleotide | Prions | Protein Interaction Domains and Motifs | Sequence Analysis, Protein | User-Computer Interface