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Minimotif miner 2nd release: a database and web system for motif search.

Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample analysis of prion shows how MnM 2 can be used. Weblink:, weblink for version 1 is

Pubmed ID: 18978024


  • Rajasekaran S
  • Balla S
  • Gradie P
  • Gryk MR
  • Kadaveru K
  • Kundeti V
  • Maciejewski MW
  • Mi T
  • Rubino N
  • Vyas J
  • Schiller MR


Nucleic acids research

Publication Data

January 16, 2009

Associated Grants

  • Agency: NIAID NIH HHS, Id: AI078708
  • Agency: NIGMS NIH HHS, Id: GM079689

Mesh Terms

  • Amino Acid Motifs
  • Databases, Protein
  • Internet
  • Polymorphism, Single Nucleotide
  • Prions
  • Protein Interaction Domains and Motifs
  • Sequence Analysis, Protein
  • User-Computer Interface