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Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

An epistasis map (E-MAP) was constructed in the fission yeast, Schizosaccharomyces pombe, by systematically measuring the phenotypes associated with pairs of mutations. This high-density, quantitative genetic interaction map focused on various aspects of chromosome function, including transcription regulation and DNA repair/replication. The E-MAP uncovered a previously unidentified component of the RNA interference (RNAi) machinery (rsh1) and linked the RNAi pathway to several other biological processes. Comparison of the S. pombe E-MAP to an analogous genetic map from the budding yeast revealed that, whereas negative interactions were conserved between genes involved in similar biological processes, positive interactions and overall genetic profiles between pairs of genes coding for physically associated proteins were even more conserved. Hence, conservation occurs at the level of the functional module (protein complex), but the genetic cross talk between modules can differ substantially.

Pubmed ID: 18818364

Authors

  • Roguev A
  • Bandyopadhyay S
  • Zofall M
  • Zhang K
  • Fischer T
  • Collins SR
  • Qu H
  • Shales M
  • Park HO
  • Hayles J
  • Hoe KL
  • Kim DU
  • Ideker T
  • Grewal SI
  • Weissman JS
  • Krogan NJ

Journal

Science (New York, N.Y.)

Publication Data

October 17, 2008

Associated Grants

  • Agency: NIGMS NIH HHS, Id: GM084279
  • Agency: NIGMS NIH HHS, Id: R01 GM084279
  • Agency: NIGMS NIH HHS, Id: R01 GM084279-01A1
  • Agency: NIGMS NIH HHS, Id: R01 GM084279-02
  • Agency: NIGMS NIH HHS, Id: R01 GM084279-02S1
  • Agency: Howard Hughes Medical Institute, Id:

Mesh Terms

  • DNA Repair
  • DNA Replication
  • Epistasis, Genetic
  • Gene Expression Regulation, Fungal
  • Gene Regulatory Networks
  • Genes, Fungal
  • Histones
  • Mutation
  • RNA Interference
  • Saccharomyces cerevisiae
  • Schizosaccharomyces
  • Schizosaccharomyces pombe Proteins