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TM4 microarray software suite.

Powerful specialized software is essential for managing, quantifying, and ultimately deriving scientific insight from results of a microarray experiment. We have developed a suite of software applications, known as TM4, to support such gene expression studies. The suite consists of open-source tools for data management and reporting, image analysis, normalization and pipeline control, and data mining and visualization. An integrated MIAME-compliant MySQL database is included. This chapter describes each component of the suite and includes a sample analysis walk-through.

Pubmed ID: 16939790


  • Saeed AI
  • Bhagabati NK
  • Braisted JC
  • Liang W
  • Sharov V
  • Howe EA
  • Li J
  • Thiagarajan M
  • White JA
  • Quackenbush J


Methods in enzymology

Publication Data

August 30, 2006

Associated Grants


Mesh Terms

  • Algorithms
  • Animals
  • Gene Expression Profiling
  • Humans
  • Oligonucleotide Array Sequence Analysis
  • Software