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NEBcutter: A program to cleave DNA with restriction enzymes.

Nucleic acids research | Jul 1, 2003

NEBcutter, version 1.0, is a program available via a web server (http://tools.neb.com/NEBcutter) that will accept an input DNA sequence and produce a comprehensive report of the restriction enzymes that will cleave the sequence. It produces a variety of outputs including restriction enzyme maps, theoretical digests and links into the restriction enzyme database, REBASE (http://www.neb.com/rebase). Importantly, its table of recognition sites is updated daily from REBASE and it marks all sites that are potentially affected by DNA methylation (Dam, Dcm, etc.). Many options exist to choose the enzymes used for digestion, including all known specificities, subsets of those that are commercially available or sets of enzymes that produce compatible termini.

Pubmed ID: 12824395 RIS Download

Mesh terms: DNA Methylation | DNA Restriction Enzymes | Deoxyribonucleases, Type II Site-Specific | Internet | Plasmids | Restriction Mapping | Sequence Analysis, DNA | Software | Substrate Specificity