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The Stanford Microarray Database: data access and quality assessment tools.

The Stanford Microarray Database (SMD; http://genome-www.stanford.edu/microarray/) serves as a microarray research database for Stanford investigators and their collaborators. In addition, SMD functions as a resource for the entire scientific community, by making freely available all of its source code and providing full public access to data published by SMD users, along with many tools to explore and analyze those data. SMD currently provides public access to data from 3500 microarrays, including data from 85 publications, and this total is increasing rapidly. In this article, we describe some of SMD's newer tools for accessing public data, assessing data quality and for data analysis.

Pubmed ID: 12519956


  • Gollub J
  • Ball CA
  • Binkley G
  • Demeter J
  • Finkelstein DB
  • Hebert JM
  • Hernandez-Boussard T
  • Jin H
  • Kaloper M
  • Matese JC
  • Schroeder M
  • Brown PO
  • Botstein D
  • Sherlock G


Nucleic acids research

Publication Data

January 1, 2003

Associated Grants


Mesh Terms

  • Animals
  • California
  • Computer Graphics
  • Databases, Genetic
  • Gene Expression Profiling
  • Humans
  • Information Storage and Retrieval
  • Oligonucleotide Array Sequence Analysis
  • Quality Control
  • Software