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Resource Name
FSL
RRID:SCR_002823 RRID Copied      
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FSL (RRID:SCR_002823)
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Resource Information

URL: http://www.fmrib.ox.ac.uk/fsl/

Proper Citation: FSL (RRID:SCR_002823)

Description: Software library of image analysis and statistical tools for fMRI, MRI and DTI brain imaging data. Include registration, atlases, diffusion MRI tools for parameter reconstruction and probabilistic taractography, and viewer. Several brain atlases, integrated into FSLView and Featquery, allow viewing of structural and cytoarchitectonic standard space labels and probability maps for cortical and subcortical structures and white matter tracts. Includes Harvard-Oxford cortical and subcortical structural atlases, Julich histological atlas, JHU DTI-based white-matter atlases, Oxford thalamic connectivity atlas, Talairach atlas, MNI structural atlas, and Cerebellum atlas.

Synonyms: , FMRIB Software Library, fMRIB Software Library, Functional Magnetic Resonance Imaging of the Brain Software Library

Resource Type: software library, software toolkit, software resource

Defining Citation: PMID:21979382, PMID:19059349, PMID:15501092

Keywords: dti, brain, imaging, data, structural, mri, diffusion, function, preprocessing, analysis, statistical, tractography, atlas, neuroimaging, parameter, reconstruction, volumetric, segmentation, independent, component, temporal, transformation

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This resource

uses

Neuroimaging Data Model

is used by

Spinal Cord Toolbox

is used by

Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)

is used by

XFSL: An FSL toolbox

is used by

CMIND PY

lists

SUSAN

lists

FUGUE

lists

Miscvis

lists

BayCEST

lists

ICA-PNM

is listed by

NeuroImaging Tools and Resources Collaboratory (NITRC)

is listed by

Debian

is listed by

SoftCite

is related to

Rodent Brain Extraction Tool

is related to

Human Connectome Coordination Facility

is related to

BASH4RfMRI

is related to

DW-MRI registration in FSL

is related to

FSL extensions

is related to

Diffusion MRI of Traumatic Brain Injury

is related to

Segmentation of Hippocampus Subfields

is related to

masked ICA (mICA) Toolbox

has parent organization

University of Oxford; Oxford; United Kingdom

has plug in

Multivariate Exploratory Linear Optimized Decomposition into Independent Components

has plug in

FMRI Expert Analysis Tool

has plug in

FABBER

has plug in

BASIL

has plug in

VERBENA

has plug in

Brain Extraction Tool

has plug in

FMRIB's Automated Segmentation Tool

has plug in

FMRIB’s Integrated Registration and Segmentation Tool

has plug in

Harvard - Oxford Cortical Structural Atlas

has plug in

FMRIB's Linear Image Registration Tool

has plug in

FNIRT

has plug in

FSLVBM

has plug in

SIENA

has plug in

SIENAX

has plug in

Multimodal Image Segmentation Tool

has plug in

Brain Intensity AbNormality Classification Algorithm

has plug in

Multimodal Surface Matching

has plug in

fsl_anat

has plug in

FMRIB's Diffusion Toolbox

has plug in

Tract Based Spatial Statistics

has plug in

XTRACT

has plug in

eddy

has plug in

topup

has plug in

eddyqc

has plug in

randomise

has plug in

PALM

has plug in

fsl-cluster

has plug in

FDR

has plug in

DualRegression

has plug in

FLOBS

has plug in

FSLeyes

has plug in

Fslutils

has plug in

Atlasquery

has plug in

MCFLIRT

has plug in

POSSUM

has plug in

FSL-MRS

Usage and Citation Metrics
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