GATKResource NameGATKProper CitationGATK (RRID:SCR_001876)AbbreviationsGATKResource Typesoftware application, software resource, software library, data analysis software, software toolkit, data processing softwareDescriptionA software package to analyze next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. This software library makes writing efficient analysis tools using next-generation sequencing data very easy, and second it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner. (entry from Genetic Analysis Software)Keywordsgene, genetic, genomic, next-generation resequencing, bio.toolsResource RelationshipsRelated ConditionFunding AgencyDefining CitationPMID:21478889AvailabilityWebsite StatusAlternate IDsnlx_154324, OMICS_00286, biotools:gatkAlternate URLshttp://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit, https://bio.tools/gatkOld URLsParent OrganizationResource IDSCR_001876SynonymsGenome Analysis ToolKitMentions Count12020v_uuid9cbac3c9-08d0-52cf-8ec3-25846ffe80e0Publications that use this research resourcePMID:38009286PMID:38010945PMID:37855660PMID:38000385PMID:37980740PMID:37930845PMID:37932383PMID:37937700PMID:38069903PMID:38229148PMID:38238806PMID:38241369PMID:38244079PMID:38054750PMID:38017281PMID:38333711PMID:38333730PMID:38192829PMID:38192904PMID:38200094PMID:38191669PMID:38310280PMID:38316816PMID:38200905PMID:38212970PMID:38216712PMID:38225950PMID:38225982PMID:38172272PMID:38172616PMID:38178249PMID:38256028PMID:38256360PMID:38270950PMID:38271269PMID:38278850PMID:38282662PMID:38287127PMID:38291185PMID:38321371PMID:37899644PMID:37903942PMID:37889051PMID:37798879PMID:37815931PMID:37775264PMID:37435641PMID:36871617PMID:38205261PMID:38212313PMID:38216572PMID:37956108PMID:38260600PMID:38263314PMID:38255870PMID:38255876PMID:37986706PMID:38191582PMID:37984866PMID:38167733PMID:38126767PMID:38193640PMID:38078724PMID:38159044PMID:38228856PMID:38232071PMID:38327511PMID:38328417PMID:38331912PMID:38298498PMID:38298900PMID:38293015PMID:38297033PMID:38320988PMID:37671615PMID:37843152PMID:37823831PMID:37757861PMID:37874259PMID:36966917PMID:38165034PMID:38167256PMID:38167372PMID:38190101PMID:38129972PMID:38157301PMID:38142443PMID:38149039PMID:38197661PMID:38200416PMID:38233864PMID:38243282PMID:37973557PMID:38273244PMID:38216990PMID:38175747PMID:38178226PMID:38180235PMID:38228612PMID:38229206